1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggcacattttgtgaaagcaagttttcagtttcactgcttcactgttatatcttaatatgcttattctacttaattatatgactaaaaggtcttatacttctgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTTATGACCAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTA
species | Glycine max |
transcript | GLYMA03G32800.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTGAATTTCCTCTCTCTGATATTAAAACAAGAAGACGCATTTTCCAG ATACACACATCAAG-ATGACATTAGCTGATGATGTCAAEST: gi|16278560|gb|BI942968.1|BI942968
genomic: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGgtaggcacat ... tgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAA
EST: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAG ATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTEST: gi|254329470|gb|GR839033.1|GR839033
genomic: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGgtaggcacat ... tgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTT
EST: AGACGCATTTTCCAG ATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTEST: gi|58014587|gb|CX701329.1|CX701329
genomic: AGACGCATTTTCCAGgtaggcacat ... tgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTT
EST: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAG ATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTEST: gi|58019738|gb|CX706480.1|CX706480
genomic: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGgtaggcacat ... tgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTT
EST: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAG ATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTEST: gi|151412684|gb|EV282496.1|EV282496
genomic: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGgtaggcacat ... tgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTT
EST: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAG ATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTEST: gi|254329469|gb|GR839032.1|GR839032
genomic: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGgtaggcacat ... tgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTT
EST: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAG ATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTT
genomic: AGATTGAATTTCCTCTCCCTGATATTAAAACAAGAAGACGCATTTTCCAGgtaggcacat ... tgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTT
tatgcttattctacttaattatatgactaaaaggtcttatacttctgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTTATGACCAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTA
gactaaa putative branch site (score: 2)
tacttct putative PPT
ttattctacttaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcacattttgtgaaagcaagttttcagtttcactgcttcactgttatatcttaatatgcttattctacttaattatatgactaaaaggtcttatacttctgaaatttagATACACACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTTATGACCAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA