Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgctatggtttgtggaagtttggcataataggaagtatgaaagctttccaagtttgatagctgatttatgtattttggtagacacatttagtgcatatacttaattctagatggtttgagtgtaagcttgcattgtttttatgacagACGGGAATTGGCCACTTTTCTCCGATTGGAGGGTATCATGTTGGAAGGGACATGGCACTTATTTTGGACGTTGCACGATTTAAGTATCCTCCCCATTGGA

Basic information

species Glycine max
transcript GLYMA03G32200.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32200.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g03760.t01 (Vitis vinifera), 3'ss of exon 2
gtatgtgctatggtttgtggaagtttggcataataggaagtatgaaagctttccaagtttgatagctgatttatgtattttggtagacacatttagtgcatatacttaattctagatggtttgagtgtaagcttgcattgtttttatgacagACGGGAATTGGCCACTTTTCTCCGATTGGAGGGTATCATGTTGGAAGGGACATGGCACTTATTTTGGACGTTGCACGATTTAAGTATCCTCCCCATTGGA
                                           |    ||   ||   | | |     |  |||  | | | ||  | |   ||  | ||| | |||||     | || |  ||| || | ||        ||||||  |||||||||| ||| || ||||| || ||||| || ||||||| ||||||||||||||| ||||||||||| |||||||| |||||||| ||||| || ||| 
-------------------------------------------gtgtactactcag--tcgttgaaatagctatagaatgttgttcagatccttcct-catgtgcttaaaat--gctgataggagagtcaactaa----acttttattgcagACGGGAACTGGTCATTTTTCACCTATTGGTGGTTATCATGCTGGAAGGGACATGGCGCTTATTTTGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26047568|gb|CA784307.1|CA784307
EST:     CCGATGACTGTCCCGTAATCTCATCGTACCACCGAGCTGCCCTCAAACAA                         ACGGGAATTGGCCACTTTTCTCCGATTGGAGGGTATCATGTTGGAAGGGAC
genomic: CCGATGACTGTCACGTAATCTCATCGTACCACCGAGCTGCCCTCAAACAAgtatgtgcta ... tttatgacagACGGGAATTGGCCACTTTTCTCCGATTGGAGGGTATCATGTTGGAAGGGAC
EST: gi|208230311|gb|GE031716.1|GE031716
EST:     TGACTGTCACGTAATCTCATCGTACCACCGAGCTGCCCTCAAACAA                         ACGGGAATTGGCCACTTTTCTCCGATTGGAGGGTATCATGTTGGAAGGGAC
genomic: TGACTGTCACGTAATCTCATCGTACCACCGAGCTGCCCTCAAACAAgtatgtgcta ... tttatgacagACGGGAATTGGCCACTTTTCTCCGATTGGAGGGTATCATGTTGGAAGGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatatacttaattctagatggtttgagtgtaagcttgcattgtttttatgacagACGGGAATTGGCCACTTTTCTCCGATTGGAGGGTATCATGTTGGAAGGGACATGGCACTTATTTTGGACGTTGCACGATTTAAGTATCCTCCCCATTGGA
      acttaat  putative branch site (score: 4)
                                        ttgttttt  putative PPT
                                       attgtttttat  TA-rich tract