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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atataaattagaaaacttgcatatatgtcaaatctaataacttctccttatttagagatatattctaaaaaaaaaacttgttttaattttattatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAATTCATGACCTGCCCCATCCTTTGTAATTGCGGTGCCCAGTTGGCTTAGT

Basic information

species Glycine max
transcript GLYMA03G31530.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394543|gb|EV264414.1|EV264414
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAG-CCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAG-AGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|193722765|gb|FK656669.1|FK656669
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|31455938|gb|CD397966.1|CD397966
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|14126060|gb|BG790498.1|BG790498
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|192295217|gb|FG986936.1|FG986936
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|22930383|gb|BU547522.1|BU547522
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|209699150|gb|BW652893.1|BW652893
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|10255026|gb|BE822792.1|BE822792
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|208074067|gb|GD870350.1|GD870350
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|209699149|gb|BW652892.1|BW652892
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|213604392|gb|DB983480.1|DB983480
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|151406946|gb|EV276761.1|EV276761
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGA
EST: gi|193648481|gb|FK596178.1|FK596178
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
EST: gi|151394747|gb|EV264618.1|EV264618
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTCGGTCTTG                         CACCAAGAGCCATGGCAAAGTCCAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAA
EST: gi|6667635|gb|AW279086.1|AW279086
EST:     CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTG                         CACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA
genomic: CAAGCGTTTACGCATCATGAAAGGAAAGGAGGCCATTGGTCTTGGTCTTGgtaagtatat ... attatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttatttagagatatattctaaaaaaaaaacttgttttaattttattatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAATTCATGACCTGCCCCATCCTTTGTAATTGCGGTGCCCAGTTGGCTTAGT
                                         ttttatt  CT-rich tract
            atatattctaaaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atataaattagaaaacttgcatatatgtcaaatctaataacttctccttatttagagatatattctaaaaaaaaaacttgttttaattttattatttcagCACCAAGAGCCATGGCAAAATCCAAGAACAGGAGCTAGACTAGTCGCACAATTCATGACCTGCCCCATCCTTTGTAATTGCGGTGCCCAGTTGGCTTAGT

- - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa