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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaaccttcagcacttttatctcctgtaaatcataaatgcattaatttttaccttctactgtctagtttaagtaattttgggagttttgctgcagTTTTTATTTTACATCTGCCATTCATTGTGTAAACGGGACTTAACATGACTGGAAAAGCATCAGCTTCAAAACCTAATATAGGTCTGAGTGGATCTGATGG

Basic information

species Glycine max
transcript GLYMA03G30320.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213605039|gb|DB956372.1|DB956372
EST:     TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAG                         TTTTTATTTTACATCTGCCATTCATTGTGNTAA-CGGGACTTAACATGACT
genomic: TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAGgtttaacctt ... tttgctgcagTTTTTATTTTACATCTGCCATTCATTGTG-TAAACGGGACTTAACATGACT
EST: gi|193671972|gb|FK616718.1|FK616718
EST:     TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAG                         TTTTTATTTTACATCTGCCATTCATTGTGTAAACGG
genomic: TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAGgtttaacctt ... tttgctgcagTTTTTATTTTACATCTGCCATTCATTGTGTAAACGG
EST: gi|209699814|gb|BW661124.1|BW661124
EST:     TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAG                         TTTTTATTTTACATCTGCCATTCATTGTGTAAACGGGACTTAACATGACTG
genomic: TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAGgtttaacctt ... tttgctgcagTTTTTATTTTACATCTGCCATTCATTGTGTAAACGGGACTTAACATGACTG
EST: gi|14126404|gb|BG790842.1|BG790842
EST:     TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAG                         TTTTTATTTTACATCTGCCATTCATTGTGTAAACGGGACTTAACATGACTG
genomic: TTTCAATCATAAGTCTGAGAGGAAGGTCCTACAACTTTTTGCAGGCAAAGgtttaacctt ... tttgctgcagTTTTTATTTTACATCTGCCATTCATTGTGTAAACGGGACTTAACATGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaatttttaccttctactgtctagtttaagtaattttgggagttttgctgcagTTTTTATTTTACATCTGCCATTCATTGTGTAAACGGGACTTAACATGACTGGAAAAGCATCAGCTTCAAAACCTAATATAGGTCTGAGTGGATCTGATGG
 cattaat  putative branch site (score: 3)
                                            ttttgct  putative PPT
                       tagtttaagtaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttaaccttcagcacttttatctcctgtaaatcataaatgcattaatttttaccttctactgtctagtttaagtaattttgggagttttgctgcagTTTTTATTTTACATCTGCCATTCATTGTGTAAACGGGACTTAACATGACTGGAAAAGCATCAGCTTCAAAACCTAATATAGGTCTGAGTGGATCTGATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA