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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatccatcacacaattttatttgtcctatgattaatagtgtattttgtgtttgtaatgttaacattcttgagttattggcagCAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGATCTTCAGAAACAATTCAAG

Basic information

species Glycine max
transcript GLYMA03G29750.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323503|gb|FK016394.1|FK016394
EST:     TCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAG                         CAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGAT
genomic: TCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAGgtaagatcca ... ttattggcagCAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGAT
EST: gi|16348675|gb|BI974279.1|BI974279
EST:     TCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAG                         CAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGAT
genomic: TCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAACCATGGACAAGgtaagatcca ... ttattggcagCAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattaatagtgtattttgtgtttgtaatgttaacattcttgagttattggcagCAAACTAGCACAGCAGAGATGTTGGACTTGGCTTTAGACTACATAAAAGATCTTCAGAAACAATTCAAG
                             tgttaac  putative branch site (score: 2)
     taatagtgtatttt  TA-rich tract