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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagtcctctacatatgtcataaacattgaagataataaaaattggcattttttgtttgttctgttttatgttttgtaaaattccgcattatttttcttgtatgatcttttctatgtttgtccggctgaattatataaatcttgctgaatagatgtgtctcgtctctttttggtaggacagTCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAG

Basic information

species Glycine max
transcript GLYMA03G29320.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207768202|gb|GD740838.1|GD740838
EST:     CTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGG                         TCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTT
genomic: CTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGgtttgtagtc ... ggtaggacagTCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattatataaatcttgctgaatagatgtgtctcgtctctttttggtaggacagTCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAG
                               tctcgtctctttttg  CT-rich tract
     tatataaatctt  TA-rich tract