1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tataaactcataaagaatgtgttaccccatctggttgtgctacttgcaaaacgaagttttagctgtataactgacaaaaggaaagtgttgctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACAAACCGTGATAAACAGAAAGCATCATATAGAAAAAGGCAATGAAATAGA
species | Glycine max |
transcript | GLYMA03G28210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATG ATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACEST: gi|192306508|gb|FG997206.1|FG997206
genomic: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATGgtaagagaat ... ctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
EST: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATG ATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACEST: gi|58024860|gb|CX711601.1|CX711601
genomic: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATGgtaagagaat ... ctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
EST: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATG ATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACEST: gi|11275131|gb|BF325454.1|BF325454
genomic: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATGgtaagagaat ... ctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
EST: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATG ATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACEST: gi|9204813|gb|BE331037.1|BE331037
genomic: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATGgtaagagaat ... ctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
EST: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATG ATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACEST: gi|11274180|gb|BF324548.1|BF324548
genomic: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATGgtaagagaat ... ctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
EST: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATG ATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACEST: gi|192306507|gb|FG997205.1|FG997205
genomic: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATGgtaagagaat ... ctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
EST: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATG ATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
genomic: TTTGGAACAATGTCAAGGACATGGGAACCATTGCCATTGTCACTATAATGgtaagagaat ... ctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGAC
gcaaaacgaagttttagctgtataactgacaaaaggaaagtgttgctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACAAACCGTGATAAACAGAAAGCATCATATAGAAAAAGGCAATGAAATAGA
tgctgac putative branch site (score: 2)
aagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaactcataaagaatgtgttaccccatctggttgtgctacttgcaaaacgaagttttagctgtataactgacaaaaggaaagtgttgctgacaacagATATAGTGATTTTGGAGTTCACACAGTACACTGCTGGGTCCAGATGGAGACAAACCGTGATAAACAGAAAGCATCATATAGAAAAAGGCAATGAAATAGA
- - - - - - - gaatgtg
- - - - - - - - - - - - ccccatc
- - - - - - - - - - - - - - - - ggttgtg
- - - - - - - - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgttg