1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaagtaattaagtgtttaattcaaacagtggggaaagagtaccttacctactactactactactttgattcttattcatgagagtgacttgtgtacattatttatgattaatgcagGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGTGCCTTAGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGC
species | Glycine max |
transcript | GLYMA03G27760.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAG GCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGEST: gi|298199289|gb|HO042652.1|HO042652
genomic: TTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGgcaagtaatt ... attaatgcagGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTG
EST: TCCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAG GCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGEST: gi|254320171|gb|GR829359.1|GR829359
genomic: TTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGgcaagtaatt ... attaatgcagGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTG
EST: TTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAG GCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGEST: gi|151396846|gb|EV266719.1|EV266719
genomic: TTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGgcaagtaatt ... attaatgcagGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTG
EST: TTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAG GCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTG
genomic: TTCTTCTCGTACTTGCCACCCTTTCATGGGCTTCTTTCTTCATCCTTCAGgcaagtaatt ... attaatgcagGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTG
actttgattcttattcatgagagtgacttgtgtacattatttatgattaatgcagGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGTGCCTTAGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGC
gattaat putative branch site (score: 3)
tgtacattatttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtaattaagtgtttaattcaaacagtggggaaagagtaccttacctactactactactactttgattcttattcatgagagtgacttgtgtacattatttatgattaatgcagGCAGTGACATTAAGGAAATACCCTGCTCAGCTCTCCCTCACAGCACTTGTGTGTGCCTTAGGTACACTGCAATCAATTGCAGTTACCTTTGTCATGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA