1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aactgcaactcttaggcactagtagtaggtactacaatttaaagcctgattttaatacacaaattatatttactaatttgcttgtaatcttgccttgcagGTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCACTTATTTGCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGAT
species | Glycine max |
transcript | GLYMA03G26680.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAG GTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCEST: gi|151393177|gb|EV263052.1|EV263052
genomic: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAGgtttttcttt ... tgccttgcagGTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGC
EST: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAG GTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCEST: gi|213589871|gb|DB959454.1|DB959454
genomic: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAGgtttttcttt ... tgccttgcagGTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGC
EST: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAG GTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCEST: gi|14011350|gb|BG726272.1|BG726272
genomic: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAGgtttttcttt ... tgccttgcagGTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGC
EST: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAG GTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGC
genomic: ACCGAGATTTTGTAGTTGGTCAAGGTGATTGCCCAAAGGATGGTCAGCAGgtttttcttt ... tgccttgcagGTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGC
ctgattttaatacacaaattatatttactaatttgcttgtaatcttgccttgcagGTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCACTTATTTGCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGAT
tactaat putative branch site (score: 1)
tcttgcctt putative PPT
tttaatacacaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgcaactcttaggcactagtagtaggtactacaatttaaagcctgattttaatacacaaattatatttactaatttgcttgtaatcttgccttgcagGTTACTTTTCACTATATTGGCTATAATGAATCTGGCCGTCGTATTGACAGCACTTATTTGCAGGGTACTCCAGCCAAAATCCGTATGGGCACCAAGGGAT
- ctgcaac
- - - - - - - - - - - - - - - - - - - - - agcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acacaaa