1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttttagaacggaaaactttgttttagaatggaaagcttattcatggaattcttctgtttgtctttagataacttacatatacttatgcttaaatgtgcagGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCGAGATGATGTTGATGTTGTTGCAATTAATGATCCATTTATTGATGCGAAATATAT
species | Glycine max |
transcript | GLYMA03G22790.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATCAAGGAGCACTGGGAAGACAAGAGTTGGAATAAATG GTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCGAGATGEST: gi|192322626|gb|FK014363.1|FK014363
genomic: AATCAAGGAGCACTGGGAAGACAAGAGTTGGAATAAATGgtaactttct ... aaatgtgcagGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCGAGATG
EST: AATCAAGGAGCACTGGGAAGACAAGAGTTGGAATAAATG GTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCGAGATGEST: gi|151407697|gb|EV277512.1|EV277512
genomic: AATCAAGGAGCACTGGGAAGACAAGAGTTGGAATAAATGgtaactttct ... aaatgtgcagGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCGAGATG
EST: AATCAAGGAGCACTGGGAAGACAAGAGTTGGAATAAAATG GTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCCGAGA
genomic: AATCAAGGAGCACTGGGAAGACAAGAGTTGGAATAAA-TGgtaactttct ... aaatgtgcagGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCC-GAGA
gaattcttctgtttgtctttagataacttacatatacttatgcttaaatgtgcagGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCGAGATGATGTTGATGTTGTTGCAATTAATGATCCATTTATTGATGCGAAATATAT
aacttac putative branch site (score: 2)
ataacttacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagaacggaaaactttgttttagaatggaaagcttattcatggaattcttctgtttgtctttagataacttacatatacttatgcttaaatgtgcagGTTTTGGTAGAATTGGAAGGTTGGTGTTACGTGTAGCTACTTTCCGAGATGATGTTGATGTTGTTGCAATTAATGATCCATTTATTGATGCGAAATATAT
- - - - -ggaaaac
- - - - - - - - - - - - - - - - - - - - -catggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctt