1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttctttattaaattatttccatgtctttcaagataagcctctttaattcttattgctactgtccggttaattgtttggtgctgggccatatctttgcagGCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTTGTTTTGATTAGAGAAGAAGCTCGTAATATGATGGGAGGGGGAATTACGG
species | Glycine max |
transcript | GLYMA03G22370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGCAAATCTAAATGACATAGCTAACCAAGCTGATGATTTGTTGGAG GCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTTEST: gi|9440489|gb|BE440993.1|BE440993
genomic: CAGCTGCAAATCTAAATGACATAGCTAACCAAGCTGATGATTTGTTGGAGgtatttataa ... atctttgcagGCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTT
EST: CAGCTGCAAATCTAAATGACATAGCTAACCAAGCTGATGATTTGTTGGAG GCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTTEST: gi|151406173|gb|EV275988.1|EV275988
genomic: CAGCTGCAAATCTAAATGACATAGCTAACCAAGCTGATGATTTGTTGGAGgtatttataa ... atctttgcagGCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTT
EST: CAGCTGCAAATCTAAATGACATAGCTAACCAAGCTGATGATTTGTTGGAG -CAATGGAA-CTCGTCCTGTTATCCCAGATCGAAA-CTACTTGCAAG-CTT
genomic: CAGCTGCAAATCTAAATGACATAGCTAACCAAGCTGATGATTTGTTGGAGgtatttataa ... atctttgcagGCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTT
aattcttattgctactgtccggttaattgtttggtgctgggccatatctttgcagGCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTTGTTTTGATTAGAGAAGAAGCTCGTAATATGATGGGAGGGGGAATTACGG
ggttaat putative branch site (score: 4)
tatcttt putative PPT
ttaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctttattaaattatttccatgtctttcaagataagcctctttaattcttattgctactgtccggttaattgtttggtgctgggccatatctttgcagGCAATGGAAACTCGTCCTGTTATCCCAGATCGAAAACTACTTGCAAGGCTTGTTTTGATTAGAGAAGAAGCTCGTAATATGATGGGAGGGGGAATTACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - catgtct
- - - - - - - - - - - - - - - - - - agcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgct