1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgatgatgcgcttttctgagatattaacagttatttgatccttttttaatttcatttcaaatgtctgatgattctcttattgcttctgatcataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTAT
species | Glycine max |
transcript | GLYMA03G22210.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAEST: gi|192325145|gb|FK017531.1|FK017531
genomic: ATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... cataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
EST: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAEST: gi|151405134|gb|EV274948.1|EV274948
genomic: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... cataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
EST: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAEST: gi|27426134|gb|CA937654.1|CA937654
genomic: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... cataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
EST: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAEST: gi|151408132|gb|EV277940.1|EV277940
genomic: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... cataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
EST: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAG GCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
genomic: CATTGCTTCAGAGACAAGAATCTGTCAAGGGAATCAAAGAATTGGAGAAGgtttgttgac ... cataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAA
ttaatttcatttcaaatgtctgatgattctcttattgcttctgatcataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTAT
ttctgat putative branch site (score: 3)
atcataattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgatgcgcttttctgagatattaacagttatttgatccttttttaatttcatttcaaatgtctgatgattctcttattgcttctgatcataattaagGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCTTGAGTGGGAACGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG