Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actagtatgtatgatgtaattttgttacaaattactggtttatgattgatgggaaatctttcaagatagagtattccatgatcactacctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGAAAATACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTAT

Basic information

species Glycine max
transcript GLYMA03G21680.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G21680.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 3'ss of exon 4
acta-gtatgtatgatgtaattttgttacaaattactggtttatgattgatgggaaatctttcaagatagagtattccatgatcactacctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGAAAATACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTAT
|||       |||     |||   | | | | ||  ||||| |            |     |  ||  |  | ||  | | |  | |  ||   |||||||| |||||||| ||||| ||||| |||||| | ||||||||||| |||||||||||||| || |||||||| ||||| |  ||||| || || || |  ||
actccactcatatatgacaatgaagcttcca-ttgttggttgaaccagagcattgagatggtggagtcattggatgtcctaacaaatgtcttcttttgcagGATGGGACCAAGGATTGTTGGGGATGTGTGTGGGTGAGAAGCGAAAGCTGAAAATACCTGCAAAACTTGGTTATGGGGCCCAGGGGTCTCCTCCTAAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193386531|gb|FK349541.1|FK349541
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|298174852|gb|HO017961.1|HO017961
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|58020884|gb|CX707626.1|CX707626
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|208137302|gb|GD934606.1|GD934606
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31465725|gb|CD407753.1|CD407753
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|193579697|gb|FK536382.1|FK536382
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAG
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAG
EST: gi|208332107|gb|GE127714.1|GE127714
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|208123014|gb|GD923678.1|GD923678
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAG
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAG
EST: gi|208286935|gb|GE089177.1|GE089177
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCT
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCT
EST: gi|31561045|gb|CD486883.1|CD486883
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|207681089|gb|GD664104.1|GD664104
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGAT
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGAT
EST: gi|31465087|gb|CD407115.1|CD407115
EST:     GGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: GGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|18734962|gb|BM528486.1|BM528486
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|207758153|gb|GD727247.1|GD727247
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|208318828|gb|GE111981.1|GE111981
EST:     GGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAGGCTGA
genomic: GGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|207734247|gb|GD711091.1|GD711091
EST:     ATAATCCAATTGAATTTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGCGAGAAGCGGAAGCTGA
genomic: ATAATCCAATTGAA-TTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|58020461|gb|CX707203.1|CX707203
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31461804|gb|CD403832.1|CD403832
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31306312|gb|CD391515.1|CD391515
EST:     TGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: TGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|192306620|gb|FG998816.1|FG998816
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|193540817|gb|FK496021.1|FK496021
EST:     GTACTGGTCAAGCGANCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: GTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|19268794|gb|BM885050.1|BM885050
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|8284542|gb|BE022110.1|BE022110
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|193629314|gb|FK575406.1|FK575406
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAAT
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAAT
EST: gi|208282062|gb|GE079348.1|GE079348
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|208253884|gb|GE055596.1|GE055596
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|151393707|gb|EV263582.1|EV263582
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|151393109|gb|EV262984.1|EV262984
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|58021248|gb|CX707990.1|CX707990
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|7640573|gb|AW734935.1|AW734935
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31463910|gb|CD405938.1|CD405938
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|19054065|gb|BM732732.1|BM732732
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|14258994|gb|BG881902.1|BG881902
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31476666|gb|CD418694.1|CD418694
EST:     AAGAAATAATCCNATTGAATTTGAGCTTGGTACTGGTCAAGTGATCCAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAANCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|193318254|gb|FK285818.1|FK285818
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|193565919|gb|FK526354.1|FK526354
EST:     TTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: TTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|8826541|gb|BE210271.1|BE210271
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|192306619|gb|FG998815.1|FG998815
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31305716|gb|CD390919.1|CD390919
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|7145658|gb|AW507580.1|AW507580
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|208064570|gb|GD863956.1|GD863956
EST:     CTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: CTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31312013|gb|CD397216.1|CD397216
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|151410901|gb|EV280716.1|EV280716
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|208178817|gb|GD975298.1|GD975298
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCT
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCT
EST: gi|19054231|gb|BM732898.1|BM732898
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|208245805|gb|GE044733.1|GE044733
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGT
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGT
EST: gi|22523442|gb|BU082253.1|BU082253
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAAGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|17022453|gb|BM093487.1|BM093487
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|151408353|gb|EV278161.1|EV278161
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|207768799|gb|GD740050.1|GD740050
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
EST: gi|31458827|gb|CD400855.1|CD400855
EST:     AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG                         GTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA
genomic: AAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAGgtatgttgtg ... ctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgggaaatctttcaagatagagtattccatgatcactacctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGAAAATACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTAT
 gattgat  putative branch site (score: 4)
                                    tcactacctctcttt  putative PPT
        aaatcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actagtatgtatgatgtaattttgttacaaattactggtttatgattgatgggaaatctttcaagatagagtattccatgatcactacctctctttgcagGTTGGGACCAGGGATTATTGGGAATGTGTCTTGGTGAGAAGCGGAAGCTGAAAATACCAGCGAAACTTGGCTATGGAGATCAGGGTTCCCCACCCACTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA