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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcagcattaaacaattctattggacaacattgaaacaattattctgttctctcttagtgcaataatggcttatgtgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCAACATACTGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT

Basic information

species Glycine max
transcript GLYMA03G14950.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G14950.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g01650.t01 (Vitis vinifera), 3'ss of exon 5
gtgtgcagcattaaacaattctattggacaacattgaaacaattattctgttctctcttagtgcaataatggcttatgtgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCAACATACTGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT
           ||   | |  ||    |||| |    | |     |||  |||||  ||  |  |    | |||||  || |||||||||||||||||||||||||||| ||||| || ||| |  | ||||  ||||  ||  ||   ||||| ||||| || || || || || || |||||||||||  
----------gtatgaagtcttaaaatacaaaagcacacc--cctttcatttctcattttttagagctttagcttagatgtttcatttgcagGCTAGTTACTACAGAGGGGAGATGCTCCCACTACTTAAGCGGCATAAGGTAATAAGATTTACCCACACTGACTCACGACTTGCGAATAATGGCCTTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208272346|gb|GE073188.1|GE073188
EST:     AGTATGCGTCGCTGAAACCTCTTGTGAAGGCCCCTGTTTCCTGGTCAAAG                         GCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCAACATACTGTT
genomic: AGTATGCGTCGCTGAAACCTCTTGTGAAGGCCCCTGTTTCCTGGTCAAAGgtgtgcagca ... tcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCAACATACTGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaattattctgttctctcttagtgcaataatggcttatgtgcttcatttgcagGCTAGTTACTACAGAGGTGAGATTCTTCCATTGTTGAAGCAACATACTGTTGTACAGTTTACTCACACAGATTCCCGGCTCGCCAACAATGGCCTTGCTT
                                           cttcattt  CT-rich tract
                           aataat  TA-rich tract