1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataataaagattgaaaagaagctttggtcttgcttttccttttattcttctttcattttgaccacttgttctgtctatgtcaaattgtctaatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCACTGTTCCTGGTGCCATTATCTGTCTTGTGTTCCAACTTCAAAATGGAGC
species | Glycine max |
transcript | GLYMA03G13780.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGG GCTTTCTGTTGGGCTGGTTGCACTTCTCCA-GGTGTTGATGCAA-TGATCAEST: gi|9900517|gb|BE609485.1|BE609485
genomic: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGGgtaagcattt ... aatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
EST: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGG GCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCAEST: gi|16343586|gb|BI969181.1|BI969181
genomic: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGGgtaagcattt ... aatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
EST: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGG GCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
genomic: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGGgtaagcattt ... aatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
tcttctttcattttgaccacttgttctgtctatgtcaaattgtctaatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCACTGTTCCTGGTGCCATTATCTGTCTTGTGTTCCAACTTCAAAATGGAGC
gtctaat putative branch site (score: 3)
tttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataataaagattgaaaagaagctttggtcttgcttttccttttattcttctttcattttgaccacttgttctgtctatgtcaaattgtctaatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCACTGTTCCTGGTGCCATTATCTGTCTTGTGTTCCAACTTCAAAATGGAGC
- - - - - - -aaaagaa
- - - - - - - - - - gctttgg
- - - - - - - - - - - - - - cttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatgtc