Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttaagattgatcctgaaattatttcttcagttagtgttgtggagttcattctgaaaaatttacattgttttttaaattttctatttttcccctttcagTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG

Basic information

species Glycine max
transcript GLYMA03G04500.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G04500.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 3'ss of exon 4
gtttaagattgatcctgaaattatttcttcagttagtgttgtgga-gttcattctgaaaaattt-acattgttttttaaattttc-tatttttcccctttcagTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG
                                   || | | |    || ||| |     |||| |  ||| |   | || | |   | ||||    |  ||||||||||||||||||||||| ||||||||  |||| || ||||||
-----------------------------------gtatggggagtatttattttatttcattttattttgctacgtgaagtctaacacttttttattgccagTATGCTCGTATTATCCAAAAGCTTGGCTTTGCTGCTAAGTTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461676|gb|CD403704.1|CD403704
EST:     TTTGTACTGGAGCTAAGAGTGAACAACCATCTAAATTGGCAGCAAGGAAG                         TATGCTCGTATTATCCNAAAACTTGGCTTCCCTGCCNAATTTAAG
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAGgtttgtactg ... cccctttcagTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG
EST: gi|27445915|gb|CA953038.1|CA953038
EST:     TAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG                         TATGCCCGTATTATCCAAAAGCTTGGCTTCCCTGCCAAATTTAAG
genomic: TAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAGgtttgtactg ... cccctttcagTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG
EST: gi|254322493|gb|GR837907.1|GR837907
EST:     TTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG                         TATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG
genomic: TTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAGgtttgtactg ... cccctttcagTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcattctgaaaaatttacattgttttttaaattttctatttttcccctttcagTATGCTCGTATTATCCAAAAACTTGGCTTCCCTGCCAAATTTAAG
                        ttttttaaattttcta  CT-rich tract
     ttctgaaaaatttaca  TA-rich tract