1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tttgtctcttccgctttctgtaatggctcttatttggtacccttcttgtaatggtttctctcgtgaactttaaatttaattttttatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG
species | Glycine max |
transcript | GLYMA03G04500.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATAAGAGATCCCNAAACAACTGCTCTAATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACCATCTAAATTGGCAGCAAGGAAGEST: gi|254322493|gb|GR837907.1|GR837907
genomic: GGATAAGAGATCCCAAAACAACTGCTCTAATTTTTGCTTCTGGCAAGATGgtatgatcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG
EST: GGATAAGAGATCCCAAAACAACTGCTCTAATTTTTGCTTCTGGCAAGATG GTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG
genomic: GGATAAGAGATCCCAAAACAACTGCTCTAATTTTTGCTTCTGGCAAGATGgtatgatcct ... tattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG
ttgtaatggtttctctcgtgaactttaaatttaattttttatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG
atttaat putative branch site (score: 4)
aactttaaatttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtctcttccgctttctgtaatggctcttatttggtacccttcttgtaatggtttctctcgtgaactttaaatttaattttttatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - -ctcttcc
- - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - -cccttct