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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttctttgcaatgttttactttctttctgtacgtgttttttttttctctggctctctggaaaatatatttatcttgatgtctttgcttccttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATT

Basic information

species Glycine max
transcript GLYMA03G01880.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01880.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0048g01980.t01 (Vitis vinifera), 3'ss of exon 4
------gtttctttgcaatgttttactttctttctgtacgtgttt-tttttttctctggctctctggaaaatatatttatcttgatgtctttgcttccttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATT
       |||  |||  | ||| ||  | | |  |||     ||| ||| | | ||  |   |||        | |  |   ||| | || |  |||||| |  ||| || ||||| |||||||| || ||||| || || |||||| ||||||| || ||||| || |||||||||||||||||||| |  || ||| ||||||| 
acttttatttgcttgataggttatagatgcctgttgtcttgatttatttctctttccagtattcttag-----tttcaagtctgaagactct--ttccttgttgcagCCATTATGCATCATGTCTTGATTACCTTGGAAATCTCAAAACAAACCTGTTACTTGACATCCATTTGCATGACCATGTTGAAATGCTGTATAATCAAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574802|gb|CX547777.1|CX547777
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG                         TCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGgtaagttggt ... cttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
EST: gi|5760592|gb|AI965955.1|AI965955
EST:     GATTTTTACTCAAG                         TCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
genomic: GATTTTTACTCAAGgtaagttggt ... cttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
EST: gi|298172715|gb|HO019755.1|HO019755
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG                         TCACTATGCTTCATGTCTGGAATACCCCGGGAACCTCAAAGC
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGgtaagttggt ... cttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGC
EST: gi|151408473|gb|EV278281.1|EV278281
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG                         TCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGgtaagttggt ... cttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
EST: gi|58015910|gb|CX702652.1|CX702652
EST:     TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAG                         TCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT
genomic: TTAGAGTTAGTACCTGAAGTAAGGGAACTGATAAATGATTTTTACTCAAGgtaagttggt ... cttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctggctctctggaaaatatatttatcttgatgtctttgcttccttttctcagTCACTATGCTTCATGTCTGGAATACCTCGGGAACCTCAAAGCAAACCTATTGCTTGATATACATTTGCATGACCATGTTGAGACACTTTATGATCAAATT
                           tcttgat  putative branch site (score: 4)
                                 tgtctttgcttccttt  CT-rich tract
               aaaatatatttatctt  TA-rich tract