Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttagatgatgaagtttgctgttgtgtttttgagctaagttttcttgttaatgtaagaatatgatcaaatttctgttaatgtcgtcatattttttttccagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACAGTTGGATTAGTGTGTCAAAATTATTCCGGGTTATTTAGGCGTCCACGTG

Basic information

species Glycine max
transcript GLYMA03G01680.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01680.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 3
gtgagttagatgatgaagtttgctgttgtgtttttgagctaagttttcttgttaatgtaagaatat-gatcaaatttctgttaatgtcgtcatattttttttccagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACAGTTGGATTAGTGTGTCAAAATTATTCCGGGTTATTTAGGCGTCCACGTG
             |    || |  || |||  |   ||||     |  | |   || |||| || |  ||| |||       |||    |   |||| || ||||||||||||||||||| || ||||| ||||| || |||||||| || || ||||||||||| ||||||||||| || || ||||| ||||| ||||||||||
------------gtaggtttggtggtggtgcatactagctggtaatcttagcccatttaagcattttaatctaataa--agcaatcctattg-atttcttatccagGTTCTTATTGATAACATCAAAGACTTTGCACCGATAATATACACTCCCACAGTTGGATTGGTGTGTCAAAACTACTCGGGGTTGTTTAGACGTCCACGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395881|gb|EV265758.1|EV265758
EST:     GGAGGATCTTAAATAGACTGCATGACAGGAACGAGACTCTGTACTACAGA                         GTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACA
genomic: GGAGGATCTTAAATAGACTGCATGACAGGAACGAGACTCTGTACTACAGAgtgagttaga ... ttttttccagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACA
EST: gi|207768422|gb|GD740442.1|GD740442
EST:     GGAGGATCTTAAATAGACTGCATGACAGGAACGAGACTCTGTACTACAGA                         GTCCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACA
genomic: GGAGGATCTTAAATAGACTGCATGACAGGAACGAGACTCTGTACTACAGAgtgagttaga ... ttttttccagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgtaagaatatgatcaaatttctgttaatgtcgtcatattttttttccagGTTCTTATTGATAATATTAAAGAGTTTGCTCCAATAATATATACCCCTACAGTTGGATTAGTGTGTCAAAATTATTCCGGGTTATTTAGGCGTCCACGTG
                           tgttaat  putative branch site (score: 3)
                                      tcatattttttttcc  putative PPT
           aatatgatcaaattt  TA-rich tract