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gtgcgtggacattttatttcagtatcttgcactagttaatatttacaattgccctacttttacatgattttgtattgctgctggcctgggttttcatgtatttttttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCAACTGTTCACAGACAGGGAGCAGCAGTCTGGGGAGGTGCTGGAAGCTTTA
species | Glycine max |
transcript | GLYMA03G00470.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCA TTTTGGACAGAGAGTTTTGTGCEST: gi|207824776|gb|GD794640.1|GD794640
genomic: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGC
EST: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCA TTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCAEST: gi|51337951|gb|CO981817.1|CO981817
genomic: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA
EST: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCA TTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCAEST: gi|193673056|gb|FK618918.1|FK618918
genomic: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA
EST: GTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGACA ATTTG-ACAGAGAGTTTTGTGCEST: gi|13240090|gb|BG359399.1|BG359399
genomic: GTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTG-CAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGC
EST: AAGCCTGATCCTGTTTATAAGCGTGCA TTTTGGACAGAGAGTTTTGTGCAATGGTCTCTTTTGGGGACATATTTGGCA
genomic: AAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA
tacatgattttgtattgctgctggcctgggttttcatgtatttttttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCAACTGTTCACAGACAGGGAGCAGCAGTCTGGGGAGGTGCTGGAAGCTTTA
ttttaat putative branch site (score: 3)
tattttttt CT-rich tract
ttttcatgtatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtggacattttatttcagtatcttgcactagttaatatttacaattgccctacttttacatgattttgtattgctgctggcctgggttttcatgtatttttttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCAACTGTTCACAGACAGGGAGCAGCAGTCTGGGGAGGTGCTGGAAGCTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG