1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcacttgatatggaaatatatccttgttaaatggcaatttaggcgtataaatgggattaaagcagcaacaattctagttgattattattatgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGTGAGGCTTGTTCAAGAATGG
species | Glycine max |
transcript | GLYMA02G48030.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATACAAAACCCGAT GTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCAEST: gi|254344188|gb|GR855273.1|GR855273
genomic: ATACAAAACCCGATgtacaaatcc ... tgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCA
EST: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGAT GTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCAEST: gi|193650382|gb|FK597227.1|FK597227
genomic: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGATgtacaaatcc ... tgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCA
EST: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGAT GTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTEST: gi|16347764|gb|BI973359.1|BI973359
genomic: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGATgtacaaatcc ... tgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTT
EST: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGAT GTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCAEST: gi|9564377|gb|BE473886.1|BE473886
genomic: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGATgtacaaatcc ... tgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCA
EST: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGAT GTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCA
genomic: ATACAAAGGATTTGGTCACAACACTTGCCCCATTGCATACAAAACCCGATgtacaaatcc ... tgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCA
tataaatgggattaaagcagcaacaattctagttgattattattatgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGTGAGGCTTGTTCAAGAATGG
agttgat putative branch site (score: 5)
aattctagttgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacttgatatggaaatatatccttgttaaatggcaatttaggcgtataaatgggattaaagcagcaacaattctagttgattattattatgtgcttcagGTTCGTTCTCACATTATGCTTGGAATTCCAAAGCACGAGGAGGTTCCATCAACCCCACAACGTCCTCTTTCAGCAATGGGTGAGGCTTGTTCAAGAATGG
- - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcagca