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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT

Basic information

species Glycine max
transcript GLYMA02G47460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g25734.1 (Oryza sativa), 3'ss of exon 4
----------------------------------------------------------------------gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttag--catgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                                      | || ||  ||||||     |  ||||||   |   | |   |   |  ||  |   |    |  | |||  ||||   | | || |  || |  |     | ||| ||| | |   ||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| || || |
gtatggaaagctcgctgtttagtagccttttgttttcttcagtttattactgctgcttttatgattgttagcatttga-ccttctctcactgaaatattgtcatggcatatgtaataaattacttttttattacttgtaggtcatgtgctatatttgc-tgcttaagaatctatttttgt-tgtctgcagGTACAAGCTTACTTGTATGATGGTTACTGGGAAGACATTGGTACCATTGAGGCATTCTATAATGCAAATCTGGGAATAACGAAAAAGCCTGTACCAGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os09g12660.2 (Oryza sativa), 3'ss of exon 4
------------------------------------------------gtatgtgttccttctg---gttatttaatatt----acgaaaactttcttgtcat--tttcttgcatagcaaaatttagc-atgcaattttt---tagaatgtt-gtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                                 | |  |||| | |||   ||| | | |  ||    | | |||||    |  |||  ||| |||   |     | ||    |   |||||||   | | ||||| |  |    || |  ||||| || | |||||||||||||||| |||||||| ||||||||||| |||||||| || ||||| ||||| ||||| ||  |||| || ||||| || |||||||| || |
gtacgctatgctcttgaaacttgtagcatgtagggaatttttatccttctctcagttcatgctgtaggttttgtgaagtttggtatgtaaactgcagttacatcatttattgtgaaatgttacttctttacttaatttttactttgcatgtttgcttatgctgctaatgtat-ttgatagGTGCAAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATAGAGGCATTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G106213_T01 (Zea mays), 3'ss of exon 4
----------------------------------------------gtatgtgttccttctggtt----atttaa-tattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtg-------tatattcaca-gGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                              || | | |   |   | ||    ||||    ||| ||         || | ||||  |    ||   ||  || |  |     ||||||| | ||||    |  || || ||       | | |||| | ||||||||||||||| |||||||| ||||||||||| |||||||| ||||| || || |||||||||||  ||||||| ||||| |||||||| || || |
gtatgctctgctcttgagctttcttggtttctcttctccagtttttgtttttatcattctggatttatgatttgggcatttcggttgaaagattttaatttcatcatttattgaagatttggcttagcctttttagta-gttgctatgtttgcttatgatgttgttgtgttcaaaagGTGCAAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATTGAAGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCTGTACCGGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G163437_T01 (Zea mays), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
             |  | ||   |    || | |   |   ||| |        | |  |    |   ||  |   |  ||||| |||| | | |   |   || | | | |   ||||| || |||||  | |||||||| || |||||||| ||||||||||||||||| || |||||||||||  ||||||| ||||| |||||  | || || |
-------------catgctagaaagc-ctaggcaggttgggttggctcaaggccggagggaggga---agggttacaccttttaaaatggtatttaagac-cttatttttgtctgcagGTTCAGGCTTATCTATATGATGGTTATTGGGAAGATATTGGTACAATTGAGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G068506_T03 (Zea mays), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
               | ||| |  | |        |  ||   ||  | |    |||      ||   ||  |      ||| ||||||   | |   |   || | | | ||  ||||| || |||||  |||||||||| ||||||||||| || ||||| |||| ||| || |||||||||||  ||||||| ||||| |||||  | || || |
--------------agcttactagaaagcctaggcaggttgg-gttgtctcaaggcaggatggaaggaagggtt--gcctttcagaatggaatttaagac-cttatttttgtttgcagGTTCAGGCTTATCTGTATGATGGTTACTGGGAAGATATCGGTACCATTGCGGCATTTTATAATGCAAACTTGGGAATAACCAAGAAGCCAATACCAGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttct-tgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
            | || | | |  | ||| ||| ||      ||| ||||| | |||||        ||   | |  |  ||| | |  ||   || || ||  |    || |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||| ||||| || ||||| ||||| || |
------------tatgatcactggaaattccgataatcaaaatgttattttatctgcattt---gccttcttaagagaactttcatagagtcaaattgc-tgcata---atctctgtagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTTTATAACGCTAATTTGGGGATCACAAAGAAGCCGGTGCCAGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S2_337V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggca-tgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                 |||      ||||   || |   | | |||   || | ||||      |||     | || |    || || |||        |  |  |   || |  |||||||| || ||||| | |||||||||||||||||| ||||| || ||||| ||||| || || |||||  | |||||||| || ||||| || ||||| |
---------------atttagcgctgattaaagaagccgacctttcaacgtcat-catat--gcctttcattcgtaactcca-agtatcttgccaaatgctaatactaggtaatatcagGTGCAGGCCTACTTATTTGATGGCTACTGGGAAGATATTGGAACTATTGAAGCTTTTTACAACGCAAACTTAGGAATCACGAAGAAGCCCGTTCCTGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S76_105V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgta-tattca-cagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                    |    |     |  || || | |  ||   ||   ||| | |     ||    | | || |    ||||||     | |  ||| |||  | || | ||||| |||||||| ||||| ||||||||||||||||| ||||| || ||||| || ||||| ||||| |||||||| ||||| || || ||||| ||||| |
-------------------gtagggtgagctgtgaatttccata-caacctcagccattggaggtaataaatagtagttgtacgtaatgttcctgagaagatttttgttctgtttatcagGTTCAAGCTTATTTGTACGATGGCTACTGGGAAGATATTGGAACTATTGAAGCATTCTACAATGCCAATCTGGGCATCACTAAGAAACCTGTTCCTGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S2_392V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatgtgttccttctggttattta---atattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
               |  ||||     ||||  | |||  ||   ||| |   |  ||   ||    | |   |  ||| | ||    | |||  | || |  | |||||||      ||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| || || ||| |||| |||||||| ||||| ||||| || |
---------------gaatattcggagatatctccaaaggttgtctgtgaacgtgatgttcagtggcaat-gacccgcattgttcccaattgtattgtgactggattgtgtac-----cagGTTCAAGCGTACTTGTATGATGGCTACTGGGAAGACATCGGTACTATCGAGGCTTTCTACAACGCGAATTTGGGCATCACCAAGAAGCCCGTGCCAGATT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S239_45V6.1 (Physcomitrella patens), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
||||      |||  |     |  |  |  ||||||  |    ||||||          ||||     || |     |||  ||||      |||   ||  |      ||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || || || || ||||| ||||||||  | || ||||| || |||||||| |||||||
gtattgaaaactttcgtaaggtccac-tcccgaaaatgtgaccgtcatt---------ggcaatggccagtact---tttcctagag----atatttgattctaaatcgtattc-cagGTTCAAGCCTACTTGTATGACGGCTACTGGGAAGATATTGGAACTATCGAAGCCTTCTACAATGCAAACTTAGGCATCACGAAGAAGCCTGTTCCTGACT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ16157 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                           ||  | || ||||   | |    |    | | |  |   |  ||      ||    |||| ||         ||||||||||| || ||||||||||| |||||||||||||| || || || ||||| || ||  |||| ||  | ||| |||| || ||||| || ||  |||
-------------------------------------------gtt-tgtttttgctctgaagggatcgaaacgaacgtgacttaaaca----atactctgttcgt-------tgcagGTGCAAGCGTATTTGTATGATGGATACTGGGAAGACATAGGGACTATAGAGGCATTTTACCATGCCAACTTAGGATTCACAAAGAAGCCCGTTCCAAACT

upper sequence: GLYMA02G47460.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ17026 (Selaginella moellendorffii), 3'ss of exon 4
gtatgtgttccttctggttatttaatattacgaaaactttcttgtcattttcttgcatagcaaaatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
                                           ||  | || ||||   | |    |    | | |  |   |  ||      |||   |||| ||       | ||||||||||| || ||||||||||| |||||||||||||| || || || ||||| || ||  |||| ||  | ||| |||| || ||||| || ||  |||
-------------------------------------------gtt-tgtttttgctctgaagggatcgaaacgaacgtgacttaaaca----atgctctgttcgt-------cgcagGTGCAAGCGTATTTGTATGATGGATACTGGGAAGACATAGGGACTATAGAGGCATTTTACCATGCCAACTTAGGATTCACAAAGAAGCCCGTTCCAAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589858|gb|BI674474.1|BI674474
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGG                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|298174060|gb|HO017396.1|HO017396
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|20498182|gb|BQ273112.1|BQ273112
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGG                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|193576586|gb|FK538387.1|FK538387
EST:     TGATTCCTGGTGTCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: TGATTCCTGGTG-CTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|207752357|gb|GD726226.1|GD726226
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|16277058|gb|BI942182.1|BI942182
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGG                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|20811566|gb|BQ296044.1|BQ296044
EST:     CTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: CTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|16278915|gb|BI943160.1|BI943160
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|13266691|gb|BG370154.1|BG370154
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGG                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAAACATTGGTACAATTGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|23728098|gb|BU762095.1|BU762095
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|15589806|gb|BI674422.1|BI674422
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|15814292|gb|BI786567.1|BI786567
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|207836048|gb|GD807403.1|GD807403
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG
EST: gi|46492701|gb|CN472257.1|CN472257
EST:     ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGA                         GTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATCGAG
genomic: ATGACTTTGGGAGTGAAGTGATTCCTGGTGCTACTTCTATTGGAATGAGGgtatgtgttc ... atattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttagcatgcaattttttagaatgttgtatggcatgtttgtgtatattcacagGTGCAAGCTTACTTGTATGATGGCTACTGGGAAGACATTGGTACAATTGAGGCTTTCTATAATGCAAATCTGGGAATCACCAAAAAGCCTGTGCCTGACT
            aattttttagaatgtt  TA-rich tract