1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgtatcaggctgatggttatgaaaactttggagcatagtaggtccatggaacatttgctgacttgtaattgttgctacattttttgatattgccttcagGGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCGGCTTCTGCTGAATGACTTAAGAAACTTAGAAGACAACACTCAAGATTTT
species | Glycine max |
transcript | GLYMA02G47100.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCTTCAACATCATATCATAAAAGGGGAGATTTTAGATCCATTATGGAG GGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCGEST: gi|208172668|gb|GD969327.1|GD969327
genomic: TTGCTTCAACATCATATCATAAAAGGGGAGATTTTAGATCCATTATGGAGgtaattgttt ... ttgccttcagGGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCG
EST: TTGCTTCAACATCATATCATAAAAGGGGAGATTTTAGATCCATTATGGAG GGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCGEST: gi|51344932|gb|CO985665.1|CO985665
genomic: TTGCTTCAACATCATATCATAAAAGGGGAGATTTTAGATCCATTATGGAGgtaattgttt ... ttgccttcagGGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCG
EST: GATCCATTATGGAG GGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCG
genomic: GATCCATTATGGAGgtaattgttt ... ttgccttcagGGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCG
catggaacatttgctgacttgtaattgttgctacattttttgatattgccttcagGGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCGGCTTCTGCTGAATGACTTAAGAAACTTAGAAGACAACACTCAAGATTTT
ttgccttc CT-rich tract
tacattttttgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatcaggctgatggttatgaaaactttggagcatagtaggtccatggaacatttgctgacttgtaattgttgctacattttttgatattgccttcagGGGTCAGATGGGTTTATCAGTAGATGAACAGAAGAAAAAGCAAGAACAGCGGCTTCTGCTGAATGACTTAAGAAACTTAGAAGACAACACTCAAGATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - -aggctga
- - - - - - - -ggttatg
- - - - - - - - - - - - - - - - - - - - - - ccatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct