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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctaaatttgatcccttttgtcccaaataatttcctcttcaactttgctctgagtgctttaagtatgctgtagAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTG

Basic information

species Glycine max
transcript GLYMA02G46390.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46390.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0090g01190.t01 (Vitis vinifera), 3'ss of exon 2
---------------------gtctaaatttgatcccttttgtcccaaataatttcctcttcaactttgctctgagtgctttaagtatgctgtagAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTG
                        ||| | | |     ||  |       || ||  ||||   ||||  | |         || ||||||| ||||||||||||| || ||| | |||||||| |||||| |||||||||| || | ||| |  |  |||| ||||||||| ||||||   ||||  ||  |||
gtttgtttgttgatctttttcagataactgttactttgttccttgtgggaaagtttgtcttaccctttttttttgacttgcaaattatgctgcagAATTTTGCAAAAAGCTTATTGGATGTTGCAGACAATCTGGGAAGAGCCTCTTTGGTGGTCAAAGAAAGTTTTTCAAAGATTGATGAATCTAAAGATACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345112|gb|CO985845.1|CO985845
EST:     TGGAAAGGACTAGACGTGAAGCAGATAATTCNNNNNNNTTTGCTTTACAG                         AATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCC
genomic: TGGAAAGGACTAGACGTGAAGCAGATAATTCAAAAAAATTTGCTTTACAGgtctaaattt ... tatgctgtagAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcccaaataatttcctcttcaactttgctctgagtgctttaagtatgctgtagAATTTTGCAAAGAGTTTACTAGATGTTGCGGACAATTTGGGAAGAGCTTCCTCGGTTGCAACGGAAAATTTTTCAAAAATTGATACGTCTAGTGACTCTG
      aaataattt  TA-rich tract