1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatagacaatagcttttgttcttgtgggttcattattaggcgttttatgtgatgactgatgatatttgtttcttgatttatcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGTGTTTGCCTCAAAGGATTGACCGTGAGAGCTTCCTCCTTGCACTTCAGA
species | Glycine max |
transcript | GLYMA02G46230.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAAT GTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGEST: gi|12691114|gb|BG157450.1|BG157450
genomic: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATgtatagacaa ... atcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAG
EST: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAAT GTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATACCGCGCEST: gi|298182882|gb|HO031617.1|HO031617
genomic: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATgtatagacaa ... atcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGC
EST: CAAATGCCCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAAT GTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGEST: gi|11413167|gb|BF425178.1|BF425178
genomic: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATgtatagacaa ... atcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAG
EST: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAAT GTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGEST: gi|7146907|gb|AW508829.1|AW508829
genomic: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATgtatagacaa ... atcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAG
EST: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAAT GTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGEST: gi|14205548|gb|BG839226.1|BG839226
genomic: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATgtatagacaa ... atcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAG
EST: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAAT GTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAG
genomic: CAAATGCTCCAGTTGATGTTGACAATTCTCCCAGCTTTGTTGCCATCAATgtatagacaa ... atcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAG
attaggcgttttatgtgatgactgatgatatttgtttcttgatttatcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGTGTTTGCCTCAAAGGATTGACCGTGAGAGCTTCCTCCTTGCACTTCAGA
tttatctt CT-rich tract
ttgatttatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagacaatagcttttgttcttgtgggttcattattaggcgttttatgtgatgactgatgatatttgtttcttgatttatcttaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGTGTTTGCCTCAAAGGATTGACCGTGAGAGCTTCCTCCTTGCACTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT