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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttggtctacttatgcaagctgtcgtttcattcatgtcaattggattattcaattcttaattgttattctcatattcgattttgtttgttggcatctgtttatcagAAAGGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCGATGATGATT

Basic information

species Glycine max
transcript GLYMA02G45770.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g54480.1 (Oryza sativa), 3'ss of exon 4
gtgggttggtctacttatgca------agctgtcgtttcattcatgtcaattggattattca---attcttaattgttattctcatattcgattttgtttgttggcatctgtttatcagAAAGGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCGATGATGATT
||||||||||    ||  | |      || |   |||| | || | |   ||   ||| |     | ||    |    | | |  |   |       || | | |  | ||  |  |||| | |||||    |||||||||    ||||  |   |||| | ||||| ||||| || || ||||| |||||||||||||||||||  || |||||||||
gtgggttggttccattgagtagtattcagttactgttttactcgtcttttttcacttaattgtagactccgtctgaaaaatgtagttccctgacagattagattg-gtttgcattgcagACAAGCATTCAGAGATGAGCTTGATGTGCTACAACTAATACGGCATCCGAATGTCGTGCAATTTTTAGGTGCTGTAACACAAAGCAGCCCAATGATGATT

upper sequence: GLYMA02G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G045366_T01 (Zea mays), 3'ss of exon 4
gtgggttggtctacttatgcaagctgtcgtttcattcatgtcaattggattattcaattcttaattgttattctcatattcgattttgtttgttggcatctgtttatcagAAAGGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCGATGATGATT
                  |   |  ||  || || |  | ||   |||  |||       ||| ||  ||  ||  ||||  ||  || | ||| | ||  |  |  |||  |||||||    || ||||||    ||||  |    ||| | ||||||||||| || || |||||||| ||||| ||||||||||  || |||||||||
------------------gtgggtagt--ttccacttgtttc---tggtctatgttggctttattt--tacccttctatt--atcctgatagtttggat--gccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcttaattgttattctcatattcgattttgtttgttggcatctgtttatcagAAAGGCATTTCATGATGAGCTTACATTGCTTGAGAAAATAAGACATCCAAATGTAGTCCAGTTTTTGGGTGCTGTAACACAAAGCACACCGATGATGATT
   tcttaat  putative branch site (score: 3)
                                           tctgttt  putative PPT
     ttaattgttattct  TA-rich tract