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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttttcgcttcagtctccaagtgaagcctttagctattgtggccttcttcaaatttgacaccctttcttattttggctttctgtagGATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCGATCAAAGTGATTGATA

Basic information

species Glycine max
transcript GLYMA02G45610.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45610.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagatttttcgcttcagtctccaagtgaagcctttagctattgtggccttcttcaaatttgacaccctttcttattttggc------tttctgtagGATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCGATCAAAGTGATTGATA
|| || |||      | | |    |  |       || | | |||||   || |||  |  |       |   | | ||          ||||   |||||||  ||||||||||||||||||||||||| |||||||| ||||||||||| |     |||||||| || |||||  | || |||||||| |||||||
gtgagttttaatatcttattaagaatttcgtataattggtt-ttgtgtttttgttcttacgtagtttgttgcttgacttgaatatattgtttcctcagGATATAACAGATTATGATGATGTTAGATACTGTTGTTCGGGAGCCGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATA

upper sequence: GLYMA02G45610.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 4
--------gtaagatttttcgcttcagtctccaagtgaagcct--ttagctattgtggccttcttcaaatttgacaccctttcttattttggctttctgtagGATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCGATCAAAGTGATTGATA
           | ||| |  ||   |||   ||| || |   |  |||  | |   | | |  |    |||||      |||    ||||   |||||| |||||||  |||||||||||||||||||||| ||||| || ||||| |||||||| ||||  ||||||||  | |||||  |||| || |||||||||||||
gtaagcaaaccatattctgagcag-agtgaacaattgcactttacttaagtttaacgacttattggctatttggtgtgttttgac-ttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTGCTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323691|gb|FK015997.1|FK015997
EST:     GCGATAATAATGTCTTTGCCCCAGTTGAGAGGGAGTTGATTTTTGATATA                         GATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTT
genomic: GCGATAATAATGTCTTTGCCCCAGTTGAGAGGGAGTTGATTTTTGATATAgtaagatttt ... ctttctgtagGATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTT
EST: gi|192323617|gb|FK017483.1|FK017483
EST:     GCGATAATAATGTCTTTGCCCCAGTTGAGAGGGAGTTGATTTTTGATATA                         GATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTT
genomic: GCGATAATAATGTCTTTGCCCCAGTTGAGAGGGAGTTGATTTTTGATATAgtaagatttt ... ctttctgtagGATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctattgtggccttcttcaaatttgacaccctttcttattttggctttctgtagGATATGTCAGATTATGATGATGTTAGATACTGCTGTTCGGGTGCCGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTATAGCGATCAAAGTGATTGATA
                     atttgac  putative branch site (score: 4)
                             ccctttcttattttgg  CT-rich tract
                                tttcttatttt  TA-rich tract