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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcttaattctgcttttctacaatttttatgctctccaacaatgaaatctaagaggcagcacattttatgattggtgcagATATATTCTGATGGCAGAACCTGACCACATATTTGTAAAGCCTTTGCCTAATTTGGCTCAGGGAACCCTGCCCGCAGCATTTCCATTTTTCTATATAAAA

Basic information

species Glycine max
transcript GLYMA02G44810.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44810.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 3'ss of exon 2
gtaagtgtcttaattctgcttt------tctacaatttttatgctct---ccaacaatgaaatctaagaggcagcacattttatgattggtgcagATATATTCTGATGGCAGAACCTGACCACATATTTGTAAAGCCTTTGCCTAATTTGGCTCAGGGAACCCTGCCCGCAGCATTTCCATTTTTCTATATAAAA
|| ||| | ||| || |  |||       | | || | |  || |||   ||   |  ||||  ||| || ||       |  | |    |||||||| ||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||| || |||  ||  || ||||  || ||||||||||| || |||
gtgagtttattacttttcttttgaacagcccagaactctattgttctattcctttacagaaacttaaaagacaaagtgcatcttaacaattgcagATACATTCTAATGGCAGAGCCTGACCACATATTTGTAAATCCTTTACCTAACTTGGCACATGGAGGCCATCCAGCAGGGTTCCCATTTTTCTACATCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgctctccaacaatgaaatctaagaggcagcacattttatgattggtgcagATATATTCTGATGGCAGAACCTGACCACATATTTGTAAAGCCTTTGCCTAATTTGGCTCAGGGAACCCTGCCCGCAGCATTTCCATTTTTCTATATAAAA
                                     attttatgatt  TA-rich tract