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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgacttgtcatatactcatatggaggactaatttcttaacgctagatcttattttcttgctgaaagcatttgacactgtcactaattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTT

Basic information

species Glycine max
transcript GLYMA02G44460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G439201_T01 (Zea mays), 3'ss of exon 2
------------------------------------------------atgacttg----tcatatact-catatggaggactaatttcttaacgcta-gatcttattttcttgctgaaa----gcatttgacact-----gtcactaattg------acat-tttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTT
                                                || | |||    | || ||   | | |  ||| ||  ||  |      ||  |||   ||||||||| ||||     | |||   |||     || | |||| |      | || |||| |||||| || || || |||||| | ||||| || || ||||| |||||||| || |||||||||||||| ||| ||||||||||| |  |||||   ||| |
gtatgcataattttcatttaggagtgttaacctacattgtctcttataatcatttggattttatgtagaacctgtttaggtcttgttagtgtttcttataatcactttttcttgcagaaacttgacttttaggacttgatagttattaatggctttgcatatatttacagGTGGTAAATCCTCCGTCCTTATGGATGTCAAACCATGGGACGATGAGACTGATATGAAGAAGCTGGAGGAGGCTGTCCGCAGTGTCCAGATGGAGGGTCT

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 4
lower sequence: AT5G19510.1 (Arabidopsis thaliana), 3'ss of exon 4
-------------atgacttgtcatatactcatatggaggactaatttcttaacgctagatcttattttcttgctgaaagcatttgacactgtcactaatt---gacattttat-agGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTT
              ||| ||      |||  |||        | | ||  ||||  |  ||||||  || |     || |  | | || || |    ||||    ||  ||| | |||||| ||||||||||| ||  | ||||||||||| ||||||||||| |||||||||||||| ||||||||| |||| ||  || |||||||||||||| |
gtaagcctcttaattgaattcgatagtacatatacaagcatgtgaattagtaac--tgcatcttaaattttaat--aagggttctaactctcttttgaattttgaactctttgttagGTGGAAAGTCTTCTGTGCTCATGGATGTTAAGCCATGGGATGATGAAACCGACATGAAGAAACTGGAAGAGGCTGTTCGTGGTGTTGAGATGCCTGGTCT

upper sequence: GLYMA02G44460.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g02410.t01 (Vitis vinifera), 3'ss of exon 4
--atgacttgtcatatactcatatggaggactaatttcttaacgctagatcttattttcttgctgaaagcatttgacactgtca----ctaattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTT
  || |  |      ||    |||||     |   || ||  |  ||| |  |   |||||      ||||||||||  | | |    |||||||  || |  ||||||| || || ||||| ||| | ||||| || ||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||| ||  |
tgataatgtccttggtaaat-tatggcatgtttggttgttttcaatagtttctggattcttat----agcatttgaccattttattttctaattg-tatctattagGTGGAAAATCGTCTGTTCTTTTGGATGTGAAACCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTATTGAGATGCCAGGCCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|41145797|gb|CK606008.1|CK606008
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|26057276|gb|CA800190.1|CA800190
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|13791524|gb|BG654115.1|BG654115
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|308098678|gb|HO760419.1|HO760419
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|7925296|gb|AW831322.1|AW831322
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|192296967|gb|FG990283.1|FG990283
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|13563312|gb|BG551532.1|BG551532
EST:     GCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCATAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCA-AGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|31462182|gb|CD404210.1|CD404210
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|41145960|gb|CK606171.1|CK606171
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|14259721|gb|BG882629.1|BG882629
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|38191164|gb|CF920370.1|CF920370
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|192299184|gb|FG990456.1|FG990456
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|298166777|gb|HO010216.1|HO010216
EST:     GGCAGCAGGGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|298190179|gb|HO032300.1|HO032300
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|192314009|gb|FK010345.1|FK010345
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|6845830|gb|AW348120.1|AW348120
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|192332130|gb|FK024590.1|FK024590
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|6072446|gb|AW101833.1|AW101833
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|6072481|gb|AW101868.1|AW101868
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|16519545|gb|BI347330.1|BI347330
EST:     GGCAGCAGAGGAAAGGGGGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAA-CCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|192314010|gb|FK010346.1|FK010346
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|17022325|gb|BM093359.1|BM093359
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|19052795|gb|BM731462.1|BM731462
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|4306961|gb|AI443979.1|AI443979
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAANAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTC
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTC
EST: gi|298169624|gb|HO020984.1|HO020984
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|9259452|gb|BE347599.1|BE347599
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|298194998|gb|HO043526.1|HO043526
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|9563902|gb|BE473411.1|BE473411
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|151409528|gb|EV279336.1|EV279336
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|17963362|gb|BM270112.1|BM270112
EST:     GGCAGCAGAGGAAAGGGAGGCTGC-AAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|14259428|gb|BG882336.1|BG882336
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGACACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|298169772|gb|HO021132.1|HO021132
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|18040489|gb|BM308783.1|BM308783
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|12689248|gb|BG155584.1|BG155584
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCC
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|298190147|gb|HO032268.1|HO032268
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|254342849|gb|GR859011.1|GR859011
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|298198832|gb|HO042195.1|HO042195
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|26048859|gb|CA785312.1|CA785312
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|9565730|gb|BE475239.1|BE475239
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
EST: gi|21889907|gb|BQ743120.1|BQ743120
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCCTT-TCGATGTTAAGCCTTGGGATGATGAGACC
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCC-TTCTCGATGTTAAGCCTTGGGATGATGAGACC
EST: gi|33388439|gb|CA851646.1|CA851646
EST:     GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGA                         GTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG
genomic: GGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAAAAAGAGAgtaagctttc ... cattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcttattttcttgctgaaagcatttgacactgtcactaattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTT
                                      taattgacattttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgacttgtcatatactcatatggaggactaatttcttaacgctagatcttattttcttgctgaaagcatttgacactgtcactaattgacattttatagGTGGCAAGTCTTCTGTCCTTCTCGATGTTAAGCCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGACTGTCCGCAGTATTGAGATGCCTGGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-tgacttg
- - - - -catatac
- - - - - - - - - - -tggagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtcac