1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagatttttgctggattttttttaaaaacatttttgtcataagtattagtatatgcactaactatattcttattaaaagtatgcaatttcttccttctttctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCTGTCTTTGATGAATACCAACGCTTTGCAGCTGCCAAAGCAA
species | Glycine max |
transcript | GLYMA02G43550.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCEST: gi|298182544|gb|HO031279.1|HO031279
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCEST: gi|9985819|gb|BE660046.1|BE660046
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCEST: gi|7926296|gb|AW832322.1|AW832322
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: ATGTCAGGAACCACCCAGTTATAATTCACTGTGAGCGTGGAAAG CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
cactaactatattcttattaaaagtatgcaatttcttccttctttctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCTGTCTTTGATGAATACCAACGCTTTGCAGCTGCCAAAGCAA
cactaac putative branch site (score: 1)
tttcttccttctttct putative PPT
tatattcttattaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatttttgctggattttttttaaaaacatttttgtcataagtattagtatatgcactaactatattcttattaaaagtatgcaatttcttccttctttctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCTGTCTTTGATGAATACCAACGCTTTGCAGCTGCCAAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA