1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattggctttgacattttgatcaactatcaccgaaattattttcttcatccttttaatttatgagttatcttgaatgcaggacccaagTAAATTTGCCGTTGCCGCCGTTGCTGCTCCTGCTGCTGCATCTGGTGCTCCAGCGGCTGCAGCCAAGGAGGAGGAAAAGAAGGAAGAACCAGCTGAAGAG
species | Glycine max |
transcript | GLYMA02G42260.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGGACCCAAGEST: gi|31466679|gb|CD408707.1|CD408707
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCT----G----AAGgtattggctt ... agg
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGGACCCAAGEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCT----G----AAGgtattggctt ... agg
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|31466064|gb|CD408092.1|CD408092
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|213593433|gb|DB977120.1|DB977120
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG TAAATTTGCCGTTGCCGCCGTTGCTGCTCCTGCTGCTGCATCTGGTGCTCCEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaagTAAATTTGCCGTTGCCGCCGTTGCTGCTCCTGCTGCTGCATCTGGTGCTCC
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|58023204|gb|CX709945.1|CX709945
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|254344863|gb|GR851346.1|GR851346
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|57575168|gb|CX548143.1|CX548143
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG GEST: gi|192334598|gb|FK025845.1|FK025845
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGGACCCAAG
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCT----G----AAGgtattggctt ... agg
aaattattttcttcatccttttaatttatgagttatcttgaatgcaggacccaagTAAATTTGCCGTTGCCGCCGTTGCTGCTCCTGCTGCTGCATCTGGTGCTCCAGCGGCTGCAGCCAAGGAGGAGGAAAAGAAGGAAGAACCAGCTGAAGAG
ttttaat putative branch site (score: 3)
ttttaatttatgagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattggctttgacattttgatcaactatcaccgaaattattttcttcatccttttaatttatgagttatcttgaatgcaggacccaagTAAATTTGCCGTTGCCGCCGTTGCTGCTCCTGCTGCTGCATCTGGTGCTCCAGCGGCTGCAGCCAAGGAGGAGGAAAAGAAGGAAGAACCAGCTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA