1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatcattcaacttgatttccattcataaattaatttaagttttcagctgtagttaataggattgcgcttagttttgtaccttggtattaatgttaacattttctaacatggtgtacccttcaaattgtttgttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGGGTATGTCGCAATATGGCAGAAACCTTCTGACAATAGCTGCTATCTAAA
species | Glycine max |
transcript | GLYMA02G41770.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAACAATGGAAAG AGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGEST: gi|7478027|gb|AW666108.1|AW666108
genomic: AGAACAATGGAAAGgtatcattca ... ttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATG
EST: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGEST: gi|37997595|gb|CF809184.1|CF809184
genomic: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATG
EST: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGEST: gi|192298288|gb|FG991736.1|FG991736
genomic: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATG
EST: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGEST: gi|151400792|gb|EV270606.1|EV270606
genomic: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATG
EST: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGEST: gi|15287021|gb|BI470912.1|BI470912
genomic: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATG
EST: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAG AGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATG
genomic: TGCCCAACCGGTTTATAAACACGAGGAAGTTTTAGAAGAACAATGGAAAGgtatcattca ... ttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATG
ttaatgttaacattttctaacatggtgtacccttcaaattgtttgttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGGGTATGTCGCAATATGGCAGAAACCTTCTGACAATAGCTGCTATCTAAA
ttctaac putative branch site (score: 1)
ttatcttc putative PPT
ttaacattttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcattcaacttgatttccattcataaattaatttaagttttcagctgtagttaataggattgcgcttagttttgtaccttggtattaatgttaacattttctaacatggtgtacccttcaaattgtttgttatcttcagAGATGCTTAATCTTACTAATCGTCTATGCTGGAAGTTATTGAAAAAAGATGGGTATGTCGCAATATGGCAGAAACCTTCTGACAATAGCTGCTATCTAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT