1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtggagtgttattatatatagctctttcaaattattggaaatgtccattctccttgtttttacacttttgttcttttccttgatggatgctaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGCGATTCCTTTGCTT
species | Glycine max |
transcript | GLYMA02G41170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCCGATCAATGTGGGAGCGATACTGTCGGGGTGTCTCTGCTATCGT ATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAEST: gi|8826727|gb|BE210457.1|BE210457
genomic: AGGTTCCGATCAATGTGGGAGCGATACTGTCGGGGTGTCTCTGCTATCGTgtattgtctc ... gctaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGA
EST: AGGTTCCGATCAATGTGGGAGCGATACTGTCGGGGTGTCTCTGCTATCGT ATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGT
genomic: AGGTTCCGATCAATGTGGGAGCGATACTGTCGGGGTGTCTCTGCTATCGTgtattgtctc ... gctaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGT
tccattctccttgtttttacacttttgttcttttccttgatggatgctaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGCGATTCCTTTGCTT
ccttgat putative branch site (score: 5)
ttgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtggagtgttattatatatagctctttcaaattattggaaatgtccattctccttgtttttacacttttgttcttttccttgatggatgctaagacagATATGTTGTAGATGCCGCTGATAGAGACAGTGTTCCAATATCTCGAAGTGAGTTACATGATCTATTGACAAAACCTTCTTTGAGTGCGATTCCTTTGCTT
- - -gagtgtt