1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtttcattacttacaagttacaataagctcttgaattaacatattcaccttcgttgttagacttcttatttttcaaatcttttatttgtgtttaagcagCCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGATACAAAAACTTTGATGAACTATATCTTTACTGTTACTATGTTGCTGGGA
species | Glycine max |
transcript | GLYMA02G40720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAG CCATTTAAAGATATGATAGAAAGGAATGAGATTGGATCTTAAGAAGCCAAGEST: gi|193536863|gb|FK492301.1|FK492301
genomic: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAGgtatggatcc ... gtttaagcagCCATTTAAAGATATGATAG-AAGGAATGAGATTGGATCTTAAGAAGCCAAG
EST: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAG CCATTTAAAGATGTGATAGAAGGAATGAGATTGGATCTCAAGAAGCCAAGAEST: gi|208168622|gb|GD968262.1|GD968262
genomic: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAGgtatggatcc ... gtttaagcagCCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGA
EST: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAG CCATTTTAAAGATATGATAGAAGGAATGAGATTGGATTCTTAAGAAGCCAAEST: gi|208257681|gb|GE053750.1|GE053750
genomic: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAGgtatggatcc ... gtttaagcagCCATTT-AAAGATATGATAGAAGGAATGAGATTGGAT-CTTAAGAAGCCAA
EST: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAG CCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGAEST: gi|208204524|gb|GE003619.1|GE003619
genomic: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAGgtatggatcc ... gtttaagcagCCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGA
EST: TTGCCAAATTTCCTGTTGACATCCAG CCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGAEST: gi|193668313|gb|FK608533.1|FK608533
genomic: TTGCCAAATTTCCTGTTGACATCCAGgtatggatcc ... gtttaagcagCCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGA
EST: TTGACGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAG CCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGA
genomic: TTGATGCTGCTTTAGCAGATACAGTTGCCAAATTTCCTGTTGACATCCAGgtatggatcc ... gtttaagcagCCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGA
tcaccttcgttgttagacttcttatttttcaaatcttttatttgtgtttaagcagCCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGATACAAAAACTTTGATGAACTATATCTTTACTGTTACTATGTTGCTGGGA
ttatttttcaaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttcattacttacaagttacaataagctcttgaattaacatattcaccttcgttgttagacttcttatttttcaaatcttttatttgtgtttaagcagCCATTTAAAGATATGATAGAAGGAATGAGATTGGATCTTAAGAAGCCAAGATACAAAAACTTTGATGAACTATATCTTTACTGTTACTATGTTGCTGGGA
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