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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatagttgattaattgttttatgtttctgttttctgaatcatgaatcaatataacacctgttcttgtttgatgatgggtttatttgttctctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCTGGCACAGCAGCACCTGTCCGAACCTAAAAGCAAATCCTTAAAAAAAGCC

Basic information

species Glycine max
transcript GLYMA02G40660.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714126|gb|BW679453.1|BW679453
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|207784554|gb|GD756499.1|GD756499
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATCCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|298193161|gb|HO033595.1|HO033595
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCTGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|254342927|gb|GR859089.1|GR859089
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|6667682|gb|AW279133.1|AW279133
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|58025014|gb|CX711755.1|CX711755
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|151396481|gb|EV266358.1|EV266358
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|151403147|gb|EV272957.1|EV272957
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|192294571|gb|FG986420.1|FG986420
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|298176835|gb|HO023308.1|HO023308
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|193385653|gb|FK350259.1|FK350259
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|19346572|gb|BM891452.1|BM891452
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|18712547|gb|BM522657.1|BM522657
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|298184997|gb|HO030210.1|HO030210
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|254334360|gb|GR844145.1|GR844145
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|19053086|gb|BM731753.1|BM731753
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|192294353|gb|FG987282.1|FG987282
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCCGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|6964412|gb|AW433105.1|AW433105
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCATGCGCATG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|6913768|gb|AW395298.1|AW395298
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|298176415|gb|HO026650.1|HO026650
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|209714125|gb|BW679452.1|BW679452
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|7233278|gb|AW568626.1|AW568626
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|254334359|gb|GR844144.1|GR844144
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|13790626|gb|BG653217.1|BG653217
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|254337349|gb|GR845132.1|GR845132
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|12774383|gb|BG239310.1|BG239310
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGT
EST: gi|18711106|gb|BM522560.1|BM522560
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|7284083|gb|AW596682.1|AW596682
EST:     GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
genomic: GCACTGACAGGAGGAAACGTGAGCCTCCACAGAGATTCATCAGGCGCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCT
EST: gi|193399674|gb|FK363521.1|FK363521
EST:     GAAACGTGAGCCTCCACAGAGATTCATCAGGCGGCAGG                         GATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGC
genomic: GAAACGTGAGCCTCCACAGAGATTCATCAGGC-GCAGGgtaacacttt ... tctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaatataacacctgttcttgtttgatgatgggtttatttgttctctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCTGGCACAGCAGCACCTGTCCGAACCTAAAAGCAAATCCTTAAAAAAAGCC
                                  tttatttgttctcttt  CT-rich tract
                                  tttatttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caatagttgattaattgttttatgtttctgttttctgaatcatgaatcaatataacacctgttcttgtttgatgatgggtttatttgttctctttgccagGATGATGCACCTAGGCCTGGTCAGCCCGGCGGCCAAGGACCTCGTCCTGCTGGCACAGCAGCACCTGTCCGAACCTAAAAGCAAATCCTTAAAAAAAGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - -gtttctg
- - - - - - - - - - - - - - - - - - - - catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgatg