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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaatgattatataaaacatcatggataaattgtttattgtatattactatcatatatgatagttttttctgatgtggcaattatgtattattggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT

Basic information

species Glycine max
transcript GLYMA02G40290.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40290.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G147245_T01 (Zea mays), 3'ss of exon 2
taaatgattatataaaacatcatggataaattgttt-attgtatattactatcatatatgatagttttttctgatgtggcaa--ttatgtattattggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT
   ||     ||  ||| |    ||| |   || |  | | |  |    |||   ||  |  ||        | ||  | ||  || |||  | ||    |||| || || || || || |||||||| ||||||||||| || ||||| ||||||||||| |  ||||||   ||| |  |||| ||| | | |   || ||
---atcggcctaggaaaaagagcggaaagtctgctcgaatctgaacgtgtatacaatgagcaagcgaacagagctgaagaaaccttttgttcttttattgcagCGATCGAGACGACGCTGTGGTCGATCGAGTGGGGCATCGCGGAGCTGGTGAACCACCCGGCCATCCAGTCCAAGCTCCGGGAGGAGCTGGGCTCGGTCCT

upper sequence: GLYMA02G40290.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G139874_T01 (Zea mays), 3'ss of exon 2
taaatgattatataaaacatcatggat-aaattgtttattgta--tattactatcatatatgatagttttttctgatgtggcaattatgtatt-attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT
   | |  |  | |||  ||   |  |  | |||| |||   |  |   ||      |     | | |       |      | | || | ||   |    |||| || || || || || |||||||| ||||||||||| || ||||| ||||||||||| |  |||||||| ||| |  |||| ||| | | |   || ||
---acgcct-caaaaagaattgcgttttgatttgtatatccaagctgccacacctgcaggcagtcggtggcaaaaaaaaaaaactaatttgtttgcttttgcagCGATCGAGACGACGCTGTGGTCGATCGAGTGGGGCATCGCCGAGCTGGTGAACCACCCGGCCATCCAGCACAAGCTCCGGGAGGAGCTCGCCTCGGTGCT

upper sequence: GLYMA02G40290.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g08150.t01 (Vitis vinifera), 3'ss of exon 2
-taaatgattatataaaacatcatggataaattgtttattgtatattactatcatatatgatagttttttctgatgtggcaattatgtattattgga-acagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT
   ||  |    |    || |  |  || | |  ||  |   || |||  |  ||   |      |    |  ||||     | |   |||  || |  |||| |||||||||||  | ||||| || |||||||||||||| ||||| |||||||||||  | |||||| | ||| | ||||||||| |  |||  || ||
gctaacaacccgagtttaccttttaaatgattctttcctaacattttaagaa-atgggttgggactggaacc-atgttaatgtgaaaaatttgtgtatgcagCTATTGAAACAACGTTGTGGTCAATCGAGTGGGGCATTGCAGAGCTGGTGAACCACCCTCACATCCAGAAGAAGCTCAGGGATGAGCTGAACACTGTGCT

upper sequence: GLYMA02G40290.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S158_96V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------------------------------------taaatgattatataaaacatcatggataaattgtttattgtatattactatcatatatgatagttttttctgatgtggcaattatgtattattggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT
                                                    || ||| |||||       || | ||   |  |  |    || |  |  |  |  |  | | |        ||||| ||||        ||     |||| || ||| ||||| |   ||| ||||| |||||||| ||||||||||||||||||||| |  | ||  ||    |   ||  ||| ||     |||  |
gtgcgaatccacaaactggttcagtcgaattgtagccggaatttgttctcacaactgactatatc---tcccacgaattg-tgatcaaaacaatctgcccgttgtcca-aacactgacgaggaatgtgtcaatgtgaccacatctatgcagCGATAGAATCAACTTTGCTGTCAATTGAATGGGGCATAGCTGAGCTTGTGAACCACCCAAACGTGCAAAAACGACTGCAGGCGGAGCTTCTTGAAGTGAT

upper sequence: GLYMA02G40290.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S56_125V6.1 (Physcomitrella patens), 3'ss of exon 2
taaatgattatataaaacatcatggataaattgtttattgtatattactatcatatatgatagttttttctgatgtggcaattatgtattattggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT-----------------------------------
                                                                                             |   |||||||||| |||||||| ||||||||||||| ||| ||||| |||||||||||| | || |||  | ||    | |   | || ||| | |||   |||||                                   
---------------------------------------------------------------------------------------------gttgcagcaattgatacaactctgtggtcgattgagtagGGGATTGCGGAGCTTGTGAACAATCCGGAG--CTAGACGGAATCC-GAGAGGAGCTAGACGCCGTTCTTGGAAAGGGCAATATGGTGATCGAGCCCGACACAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098189|gb|HO761360.1|HO761360
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|20812136|gb|BQ296614.1|BQ296614
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|151399523|gb|EV269394.1|EV269394
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|17400108|gb|BM176890.1|BM176890
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|22522132|gb|BU080943.1|BU080943
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|21888481|gb|BQ741694.1|BQ741694
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTTTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|120530426|gb|EH258559.1|EH258559
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|16346068|gb|BI971663.1|BI971663
EST:     CATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: CATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|11412123|gb|BF424134.1|BF424134
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|17998747|gb|BI119557.1|BI119557
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|193487702|gb|FK452683.1|FK452683
EST:     CATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: CATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|10846630|gb|BF069466.1|BF069466
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|21887696|gb|BQ740909.1|BQ740909
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|19052552|gb|BM731219.1|BM731219
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|6455309|gb|AW185992.1|AW185992
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|15285087|gb|BI468978.1|BI468978
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|7458639|gb|AW666089.1|AW666089
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|6481577|gb|AW200848.1|AW200848
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGCTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|21637861|gb|BM108016.1|BM108016
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTTG
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGT-G
EST: gi|192307600|gb|FG999639.1|FG999639
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAACCATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|33388383|gb|CA851590.1|CA851590
EST:     GATCAACGAAGACAACGTCCTCTACATTGNTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|18735017|gb|BM528516.1|BM528516
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|17152909|gb|BM142842.1|BM142842
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTG
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTG
EST: gi|19346418|gb|BM891298.1|BM891298
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|15287266|gb|BI471157.1|BI471157
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|298190342|gb|HO032463.1|HO032463
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCGACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|16348951|gb|BI974546.1|BI974546
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|16349325|gb|BI974920.1|BI974920
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|38191427|gb|CF920633.1|CF920633
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|151402119|gb|EV271932.1|EV271932
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|14258610|gb|BG881518.1|BG881518
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGC
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGC
EST: gi|20075820|gb|BQ094603.1|BQ094603
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|19453047|gb|BM954457.1|BM954457
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA
EST: gi|5058051|gb|AI736527.1|AI736527
EST:     GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTG                         CAATTGAAACAACTCTATGGTCGATTGAGTGNGGCATTGCTGAGCTTGTGA
genomic: GATCAACGAAGACAACGTCCTCTACATTGTTGAAAACATCAACGTTGCTGgtaagatgct ... attggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatcatatatgatagttttttctgatgtggcaattatgtattattggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT
                      ttctgat  putative branch site (score: 3)
       atatatgatagttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taaatgattatataaaacatcatggataaattgtttattgtatattactatcatatatgatagttttttctgatgtggcaattatgtattattggaacagCAATTGAAACAACTCTATGGTCGATTGAGTGGGGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAGCAAAAGTTAAGGGATGAGATTGACAGAGTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC