1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgaggctggaaccaatatgtgatattatttcattcaataaggagacattaattgttgacttgcagttcttacttgttagattattattctattctcaattggagtgtgacaaacatggtgaattaaacttttaattatgccaaccaacagctatattatgcatatacttttctgaggcaattttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCA
species | Glycine max |
transcript | GLYMA02G36960.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGEST: gi|15284959|gb|BI468850.1|BI468850
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGEST: gi|193622817|gb|FK571535.1|FK571535
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: CCAAATATTAAAG GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGEST: gi|207735719|gb|GD713054.1|GD713054
genomic: CCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGEST: gi|193438789|gb|FK407078.1|FK407078
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGEST: gi|193493227|gb|FK460033.1|FK460033
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
EST: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAG GACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
genomic: AAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGgtgaggctgg ... ttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTG
tgccaaccaacagctatattatgcatatacttttctgaggcaattttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCA
ttttccctgc CT-rich tract
tatattatgcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggctggaaccaatatgtgatattatttcattcaataaggagacattaattgttgacttgcagttcttacttgttagattattattctattctcaattggagtgtgacaaacatggtgaattaaacttttaattatgccaaccaacagctatattatgcatatacttttctgaggcaattttccctgcagGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA