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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttttaaatacccagggcactgtgattttttcctaaacagaaagaaatgttatatacttacatttgtcctttttttatgtcactacagTCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAAGAGTAGTATCACACCTTTGGTTCGATGCACTCGTCATATGTGCCCAATC

Basic information

species Glycine max
transcript GLYMA02G35400.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185762|gb|HO028073.1|HO028073
EST:     TGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGAGAATGTGTAGA                         TCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAA
genomic: TGTGCATGTGGCTGCCAGGGCAACTCATCTCAATCAGGAGAATGTGTAGAgtaggtttta ... gtcactacagTCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacagaaagaaatgttatatacttacatttgtcctttttttatgtcactacagTCCAGATTCACCACATTTGCAATCAGTTGTTTCCAACGCTGGACCTGGAAAGAGTAGTATCACACCTTTGGTTCGATGCACTCGTCATATGTGCCCAATC
                     tacttac  putative branch site (score: 1)
                                 tcctttttttatgtc  putative PPT
           aaatgttatatactta  TA-rich tract