1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacatgatccctttttctcccaatgccttatggtatacttgtcatctgtgtagctgatatattgtaatatatgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACTCTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAAGGGTAATA
species | Glycine max |
transcript | GLYMA02G31080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG GTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTNTAGGGGGTCTGACEST: gi|193524564|gb|FK481931.1|FK481931
genomic: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAGgtaacatgat ... atgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGAC
EST: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG GTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACEST: gi|193495314|gb|FK459336.1|FK459336
genomic: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAGgtaacatgat ... atgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGAC
EST: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG GTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACEST: gi|193509251|gb|FK467023.1|FK467023
genomic: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAGgtaacatgat ... atgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGAC
EST: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG GTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACEST: gi|208309417|gb|GE102117.1|GE102117
genomic: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAGgtaacatgat ... atgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGAC
EST: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG GTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACEST: gi|193582672|gb|FK537368.1|FK537368
genomic: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAGgtaacatgat ... atgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGAC
EST: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAG GTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGAC
genomic: GGGATGTTGTTCAGAATCTTAAAGAATATTTCAGAGCAATGTACAAGAAGgtaacatgat ... atgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGAC
ccttatggtatacttgtcatctgtgtagctgatatattgtaatatatgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACTCTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAAGGGTAATA
agctgat putative branch site (score: 4)
atatattgtaatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatgatccctttttctcccaatgccttatggtatacttgtcatctgtgtagctgatatattgtaatatatgctaatagGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGGTCTGACTCTGAGAAAAATGATTTGATTGATCTGTACAAGAAGTGCAAGGGTAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT