1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aataaaagaaacaataaagtcaaacatatttattatttttactattgaggatctaatgaacaaaaactgaagagtgatgaaattgttctgtgacttacagGCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAACTTCTAACAACACGCCAAGCCGCGAGGTGTTTGGTGGCAATTTCTGAGTACTTCCATC
species | Glycine max |
transcript | GLYMA02G30090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGTGGCAATCAACAAACTCTCCACCCTTGAAAGCTTTGTGAGACAG GCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAACTTCTAACA
genomic: TGGCTGTGGCAATCAACAAACTCTCCACCCTTGAAAGCTTTGTGAGACAGgtacgttaca ... tgacttacagGCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAACTTCTAACA
tgaggatctaatgaacaaaaactgaagagtgatgaaattgttctgtgacttacagGCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAACTTCTAACAACACGCCAAGCCGCGAGGTGTTTGGTGGCAATTTCTGAGTACTTCCATC
atctaat putative branch site (score: 3)
aacaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaaagaaacaataaagtcaaacatatttattatttttactattgaggatctaatgaacaaaaactgaagagtgatgaaattgttctgtgacttacagGCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAACTTCTAACAACACGCCAAGCCGCGAGGTGTTTGGTGGCAATTTCTGAGTACTTCCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
aataaaa
- - - -gaaacaat
- - - - - - - - - - caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgatg