Sequence
atgc intronic sequence ATGC exonic sequencegttgggaattgatttggcatatggtagttcaattatgtttgtacacaaattagaatgatgtgtgcttgcatgcagGTTGAATTTAACAAGGCTGCACAATCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACCGGTTAAG
Basic information
species | Glycine max |
transcript | GLYMA02G26620.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G26620.2 (Glycine max), 3'ss of exon 4
lower sequence: AT3G58560.1 (Arabidopsis thaliana), 3'ss of exon 4
gttgggaattgatttggcatatggtagttcaattatgtttgtacacaaattagaatgatgtgtgcttgcatgcagGTTGAATTTAACAAGGCTGCACAATCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACCGGTTAAG
| | || ||| | || | || | | || || | || | | ||| |||||||| || |||||||||||||| |||||||| ||||||| || || | |||||||||| ||| |||||||| ||| |||
-gtatgtcttagttt--tctcctgttacctatctaattaggcccatttgctaaatcattgggctgct-catccagGTTGAGTTCAACAAGGCTGCACAGTCTTTGACTGAGGCTATTATCCCTGTTTCCCAGAAGAAAAATGCTTTGAATCGGTTGGTCAAG
upper sequence: GLYMA02G26620.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 3'ss of exon 4
gttgggaattgatttggcatatgg----tagttcaattatgtttgtacacaaattagaat-gatgtgtgcttgcatgcagGTTGAATTTAACAAGGCTGCACAATCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACCGGTTAAG
|| ||| || |||| ||||| |||| | ||| | ||| || ||| ||| | |||||| || |||||||||||||| |||||||| || |||||||| || ||| |||||| |||| ||||||||||| | ||||||| ||||||
gtaatgaagtg-tttgtattatggactccagttttctgtggttattgcacttgctaaaatagatttatgcttgtatacagGTTGAATTTAATAAGGCTGCCCAGTCTTTGACGGACGCTGTGGTTCCAAGTGCTCAAAAGAAAACTGCTCTAAATCGACTAGTTAAG
upper sequence: GLYMA02G26620.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S101_26V6.1 (Physcomitrella patens), 3'ss of exon 4
---------------gttgggaattgatttggcatatg-gtagttcaattatgtttgt---------acacaaattagaatgatgtgtgcttgcatgcagGTTGAATTTAACAAGGCTGCACAATCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACCGGTTAAG
||| | ||| || | | | ||| | | ||| |||| | ||||| | | | | |||||||||| |||||||| ||||||||||||||| | |||||| | ||||| || |||||| || || | ||| | | |||
tttcttagcacgtcggtttaggattaccatgttgtctttgaagtactgtaatgattgtcttaacttaatgcaaatatggctctcattgtcaattgtgcagGTTGAGTTTAACAAAGCTGCACAATCTTTGTCGGAGGCTTTGGTACCAACAAC---AAAGAAAGTGGCTTTAAGTCGGCTTTTGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atggtagttcaattatgtttgtacacaaattagaatgatgtgtgcttgcatgcagGTTGAATTTAACAAGGCTGCACAATCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACCGGTTAAG
aattatgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgggaattgatttggcatatggtagttcaattatgtttgtacacaaattagaatgatgtgtgcttgcatgcagGTTGAATTTAACAAGGCTGCACAATCTTTGACAGAGGCTACAATTCCAACCACTCAGAAGAAAACTGCCTTGAATCGACCGGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA