1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcttgtgttttatctggactcagcaatcagattatttactttgttaccattcgtttggaaagaccattataaccatttttaacattgttaattgttgtagCTTGCGGAGTTGTTGCAACGATTCTAGTGGTTCTCTGCTTGTTCTGGGTTTGCTTTGTAGACAATGCTGACATTCATACCCAAGGAACAACAACAACATT
species | Glycine max |
transcript | GLYMA02G19430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTCCTACTGTTTGGCTACGTGACCTACGCATTCTCAGTTACATCTCAG CTTGCGGAGTTGTTGCAACGATTCTAGTGGTTCTCTGCTTGTTCTGGGTTT
genomic: TCTTCCTACTGTTTGGCTACGTGACCTACGCATTCTCAGTTACATCTCAGgtacaagttt ... attgttgtagCTTGCGGAGTTGTTGCAACGATTCTAGTGGTTCTCTGCTTGTTCTGGGTTT
accattcgtttggaaagaccattataaccatttttaacattgttaattgttgtagCTTGCGGAGTTGTTGCAACGATTCTAGTGGTTCTCTGCTTGTTCTGGGTTTGCTTTGTAGACAATGCTGACATTCATACCCAAGGAACAACAACAACATT
attataaccattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgtgttttatctggactcagcaatcagattatttactttgttaccattcgtttggaaagaccattataaccatttttaacattgttaattgttgtagCTTGCGGAGTTGTTGCAACGATTCTAGTGGTTCTCTGCTTGTTCTGGGTTTGCTTTGTAGACAATGCTGACATTCATACCCAAGGAACAACAACAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
gcttgtg
- - - - - - - - - - - gcaatca
- - - - - - - - - - - - - - - - - - - - -tgttacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagac