1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aatattattattgttgataaatatatgttctctgcatgaaaaccaaattcacttgaagtaaatatgtaggatcatggtgcctctgtcttttatataatagGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCAC
species | Glycine max |
transcript | GLYMA02G16860.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTG GATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGTEST: gi|192334194|gb|FK026575.1|FK026575
genomic: AAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGgtgtgcagtt ... tatataatagGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGT
EST: AAGATTCTACTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTG GATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGTEST: gi|298179338|gb|HO027809.1|HO027809
genomic: AAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGgtgtgcagtt ... tatataatagGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGT
EST: AAGATTCTGCTTTGATGCTATCAATGAGTAAAGGGGTTCCTTGGTATCTG GATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGT
genomic: AAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGgtgtgcagtt ... tatataatagGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGT
aattcacttgaagtaaatatgtaggatcatggtgcctctgtcttttatataatagGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCAC
tgcctctgtctttt CT-rich tract
tgtcttttatataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatattattattgttgataaatatatgttctctgcatgaaaaccaaattcacttgaagtaaatatgtaggatcatggtgcctctgtcttttatataatagGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCTGCTGGTTTTGCATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGCTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA