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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttttttttttttggatactttttatcacctatctatctatcaaacattgggttattaaccttaccatactctttaaatttgtttttaattatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACGCAGAAATCTGGAGTTATGGGGTCAAGAATCAAATGGAATTTCACAAAGT

Basic information

species Glycine max
transcript GLYMA02G16800.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38192369|gb|CF921575.1|CF921575
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|38193656|gb|CF922862.1|CF922862
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|192331125|gb|FK020345.1|FK020345
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|38193508|gb|CF922714.1|CF922714
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|38192642|gb|CF921848.1|CF921848
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGCCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|38193765|gb|CF922971.1|CF922971
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|151408599|gb|EV278407.1|EV278407
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|38191657|gb|CF920863.1|CF920863
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|41146473|gb|CK606684.1|CK606684
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|16344874|gb|BI970469.1|BI970469
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|38192866|gb|CF922072.1|CF922072
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
EST: gi|38192483|gb|CF921689.1|CF921689
EST:     AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAG                         ATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG
genomic: AAGACTTTGCTTGTACAAGATATAAGGCTGAGTATCCCATTTTTGGGAAGgtatgttgtt ... ttatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattgggttattaaccttaccatactctttaaatttgtttttaattatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACGCAGAAATCTGGAGTTATGGGGTCAAGAATCAAATGGAATTTCACAAAGT
                 ttaccatactctttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttttttttttttggatactttttatcacctatctatctatcaaacattgggttattaaccttaccatactctttaaatttgtttttaattatatgtagATACGTGTGAATGGATCAGATACTGCACCAGTCTTCAAATTCCTGAAAACGCAGAAATCTGGAGTTATGGGGTCAAGAATCAAATGGAATTTCACAAAGT

- - - - - - - - - - - - - - - - - - - - - caaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttacc