Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtaaattatttttcttggaattttttacagagattccaaatttggcatcaaatttacttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG

Basic information

species Glycine max
transcript GLYMA02G14300.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14300.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G088397_T01 (Zea mays), 3'ss of exon 4
gtat-tgtaaattatttttcttggaatt----ttttacagagattccaaatttggcatcaaatttacttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG
||   || | ||| | | ||||  |  |    |  |  ||| | | | ||     ||  | |   |||    | |  | |  |  |  | | || ||||||| ||||| |||||  | |||||||| ||||| |||||||||||| | || || |||||||| || |||||||| || 
gtgggtgcacattttctatcttaaatgtcagatcatgtagaaacttccaacac--caaaagacgaact--atttatctataatacttttgttttgcagCTGATGAGATTAAAGAGTTGTGGGAAGAATATGAGAACAATTCTTCTATTGAAGCCAATCTTGTAAAAGATTTTGATAAA

upper sequence: GLYMA02G14300.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 5
gtattgtaaattatttttcttggaattttttacagagattccaaatttggcatcaaatttac------ttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG
     |||     |||| ||||  | |||  | |||      |||| ||  ||    ||  |       || || | |   | ||||  | | || ||| ||| ||| | |||||||||||||| ||||||||||| || |||||  ||||||| |||||||| || |||||||| || 
-----gtactcgcttttgcttgctactttgga-agacgagttaaatgtgttatttttttggcagtaaactaagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA

upper sequence: GLYMA02G14300.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g02440.t01 (Vitis vinifera), 3'ss of exon 10
----gtattgtaaattatttttcttggaattttttacagagattccaaatttggcatcaaatttacttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG
      | | |   ||  |  | | | |     ||| |   |||     |||||||  ||| |     | || | |   | ||||  | | || ||| ||| ||| | |||||||||||||| ||||||||||| || |||||  ||||||| |||||||| || |||||||| || 
gtgctcacttttgcttgctactgtggaagacagttaaatgtattatttttttggcagtaaact-----aagtaattggatattttattatcttgcagTTGAAGAGTTTAAAGAACTTTGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGAAAAA

upper sequence: GLYMA02G14300.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g02430.t01 (Vitis vinifera), 3'ss of exon 4
gtattgtaaattattt--ttct-tggaattttttacagagattccaaatttggcatcaaatttacttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG
||| |     ||  ||  | || |||||      |   | |||   | |||     ||   | |  || || | |   | ||||  | | || ||||||| |||||||||||||| ||||| ||||||||||| || |||||  ||||||| |||||||| || ||||||||||| 
gtactcacttttgcttgctactgtggaagacagaattaaaattgttatttttttggcag--taaactaagtaattggatattttattatcttgcagCTGACGAGATCAAAGAACTATGGGAGGAGTATGAAAATAACTCTTCCTTAGAGGCTAATCTTGTAAAAGATTTTGACAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|62531354|gb|DN828683.1|DN828683
EST:     GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAG                         CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG
genomic: GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAGgtattgtaaa ... tttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG
EST: gi|61996841|gb|DN676662.1|DN676662
EST:     GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAG                         CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG
genomic: GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAGgtattgtaaa ... tttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG
EST: gi|51344946|gb|CO985679.1|CO985679
EST:     GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAG                         CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG
genomic: GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAGgtattgtaaa ... tttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG
EST: gi|12689507|gb|BG155843.1|BG155843
EST:     GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAG                         CTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG
genomic: GCTGGAAGCTTTGAACAAAATGTGTGAACTTCTTGGTGGAGGGATGAGAGgtattgtaaa ... tttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccaaatttggcatcaaatttacttaggtcacttttttttttcctttattacagCTGAGGAGATCAAAGAACTTTGGGAAGAGTATGAAAACAATTCTTCTGTAGAGGCAAATCTTGTTAAGGATTTTGACAAG
                             tcacttttttttttcc  CT-rich tract
                               acttttttttttcctt  TA-rich tract