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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatacgtttataattcctttggtctttttatacagatttggaaaatatgtgtttccagaagtgcttaagtttaaacattttcagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA

Basic information

species Glycine max
transcript GLYMA02G14110.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 4
------------------------------------------------------------------------------------gttcatacgtttataattcctttggtctttttatacagatttggaaaatatgtgtttccagaagtgcttaagtttaaacattttcagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA
                                                                                     |||||      ||   |  ||||    | |  ||    |||     || ||||||     |   | | ||   |     ||||||||| ||||| ||||| ||||| || || ||||||||  | ||||||||||| |||||||| |||||||| ||||| |||||  | || ||||| | |||||
gttgcttcacctttttgaacttgaccctatatatgcctttcccctatcttttgtttccacaaaagatcttaatacaaaccaaacattcatttcgcaatttatattttgtatgtatagtatctttttcatccatctgtgttgtttaacaagatgaacgatggcatttttcagGTTTATCCGATGTATAAGGCTTTCATTGAGCCAGACTTGCAGACAGCACATATAAAAATAATCAACAAGTTCAACCCATTCTCAGGGTTCCAAAATCCTA

upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G147430_T02 (Zea mays), 3'ss of exon 4
---------------------gttcatacgttt-ataattcctttggtctttttatacagatttggaaaatatgtgtttccagaagtgcttaagtttaa---------acatttt-cagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA
                     |   |||| ||| || |    | | ||  |    |    |   |  || ||  | || |   || || |   ||||||         ||||||| ||||| ||||||||||||||||| || ||||| |||||| |  |||| ||||| || || ||||||||||| ||||| |||||| | || ||||| | |||||
gtaggttgaattttccaacttggctatacattttatgagcaatgttgttgtccattgttaaca-gtgaattacctcttactgtaattggtgtggtttaatgaaatatgacatttttcagGTTTATCCAATGTACAAGGCTTTCATCGAACCAGATTTGGAGACCGCACATATTAAGATCATCAACAAGTTCAACCCATTTTCAGGGTTCCAAAATCCTA

upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G143804_T01 (Zea mays), 3'ss of exon 1
-----------------------------------------------------------------------------gttcatacgtttataat--tcctttggtc--tttttatacagatttggaaaata-tgtgtttccagaagtgcttaagtttaa----acattttcagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA
                                                                              || | || ||   |    || | ||||   | || | |  || ||||    || |||  ||   |  ||| || | |  ||    ||||||| |||| |||| |||||||||||| || ||||| |||||| | ||||| ||||| || |||||||| ||||| ||||| ||||   | || ||||| | |||||
gtacaacgagctagccaggaacccgaagaaataattgatcaaatctctcaaacgataggttgaaatttccaacttggctttacacattaggagcaatcttgtggttcatgttaacagtgaattggctcttactgtaatt---ggtgtggtttaatcaaagatgacatttttagGTTTATCTAATGTACAAGGCTTTCATCGAACCAGATTTACAGACCGCACATATTAAAATCATTAACAAGTTCAACCCATGCTCAGGTTTCCAAAATCCTA

upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 3'ss of exon 4
gttcatacgtttataattcctttggtctttttatacagatttggaaaatatgtgtttccagaagtgcttaagtttaaa---cattttc-----agGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA
|||  | |   | |  ||  ||| || |   | |   | ||   |  ||||| | | |||  | || |||  || | |   || | |      |||| || || |||||||| || || || ||||||||||||||||| || || || |||||||| || |||||||| || || ||||| || ||||| || |
gtttgtcctcatttcttttatttcgtgtgactgtttggttt---agtatatgagctgcca--attgtttatattaacaactcactgtttatgtagGTATACCCGATGTACAAAGCTTTCATTGAGCCAGATCTCCAGACTGCTCAAATCAAAATCATTAATAAATTCAACCCCTTCACTGGTTTTCAGAGCCCGA

upper sequence: GLYMA02G14110.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 3'ss of exon 3
gttcatacgtttataattcctttggt-ctttttatacagatttgga---aaatatgtgtttccagaagtgcttaagtttaaacatttt--cagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA
|||| | |  |||   |    |   | |      ||   |||| ||    | | ||  |||| |||| | || || |  |  | |||   ||||| ||||||||||||||||| ||||| ||||||||||||   |||||||| |||||||||| ||| || ||||| ||||| |||||||| |||||||| |
gttctttcacttaccctctgctaaatacgccccttaagaattttgactggattttgcttttcaagaatttctcaactacattcttttaaacagGTATATCCAATGTACAAGGCTTTTATTGAGCCAGATCTCGGAACAGCACATATAAAAATCACCAATAAGTTCAACCCATTCACTGGATTTCAGAGTCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacagatttggaaaatatgtgtttccagaagtgcttaagtttaaacattttcagGTGTATCCAATGTACAAGGCATTTATCGAGCCAGATCTCCAGACAGCACACATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGTCCTA
                                              cattttc  CT-rich tract
                                   ttaagtttaaacattt  TA-rich tract