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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctactcattattattctgttttctaaaactcctggatgattgaaaatttgagaatcaaaatgaatactgctgcagatgttgatttaattgtgctttttttctgcctgccaatcgttgcttatagttggaaagtctggctgaatacaacaacattggctgcacttgtagGTTGAGGATCATGAACTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCTGAGGCTCTGCATAAAGTAGGTAGAA

Basic information

species Glycine max
transcript GLYMA02G13980.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G13980.1 (Glycine max), 3'ss of exon 4
lower sequence: 13113.m00214 (Oryza sativa), 3'ss of exon 4
gtgagttctactcattattattctgttttctaaaactcctggatgattgaaaatttgagaatcaaaatgaatactgct-gcagatgttgatttaattgtgctttttttctgcctgccaatcgttgcttatagttggaaagtctggctgaatacaacaacattggctgcacttgtagGTTGAGGATCATGAACTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCTGAGGCTCTGCATAAAGTAGGTAGAA
                                                                  |||  |  | || |    | |   || |  |||   | | || ||  || ||||  ||   | |   |  ||| |||   |     | |  |  ||   | |     ||| | || || |||||| ||||| |||| |||||||| ||||| ||  |||||||| | |||||||| ||||||||||| ||| |  | | |||||| || |
----------------------------------------------------------------gtatgctttgtcctcgtcagtttatcttcaggtgtttctgtattttgattgacaatattt---tgtttctataaaatcttagtatcgcctattatgttattttc-----tagATAGAAGACCATGAAATTGCACATGTGGCTGCAGTTAGTGCAGGAGATGATTATGCTGTTGGAAATATGATTTCTGATGCTTTTAAAAGAGTAGGCAGGA

upper sequence: GLYMA02G13980.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0010g00920.t01 (Vitis vinifera), 3'ss of exon 4
gtgagttctactcattattattctgttttctaaaactcctggatgattga-aaatttgagaatcaaaatgaatactgctgcagatgttgatttaattgtgctttttttctgcctgccaatcgttgcttatagttggaaagt-ctggctgaatacaacaac--attggctgcac-ttgtagGTTGAGGATCATGAACTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCTGAGGCTCTGCATAAAGTAGGTAGAA
    ||   |    |  || || | |||||   ||       || ||| | ||| |||  ||  |   | |  | ||   || |    || |  |||||  ||   |  |        ||  |   | | | ||  | | |  |  ||| |    ||  |  | |   |  |  ||| |||||||||||||||| |||||| ||||||||||||| |||||||||||||||||| |||| || |||||||||||||| ||| | |   | ||||| || |
----gtatcaagactatttcttatattttcatgaaaaaaattataattcagaaaattgttaaaaattgtaagcattgaaacaaaga--gaatatattgtatttgggtattaat-----attatctttaagaattatataatattacctggaattgactgccaaataattataaattgcagGTTGAGGATCATGAGCTTGCACATGTTGCTGCAGTTAGTGCTGGGAATGATTATACAGTGGGCAACATGATTTCTGATGCTATTCGACAGGTAGGAAGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcttatagttggaaagtctggctgaatacaacaacattggctgcacttgtagGTTGAGGATCATGAACTTGCAGATGTTGCTGCAGTCAGTGCTGGGAATGATTATTCAGTTGGAAACATGATTTCTGAGGCTCTGCATAAAGTAGGTAGAA
     ttatagtt  TA-rich tract