Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatgcttgtctgtttgatcttgtgttttagtactaaattagttcataagttatttatattgtacactataccgtcatttgattttcgctaatgttttaattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACT

Basic information

species Glycine max
transcript GLYMA02G12930.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g00620.t01 (Vitis vinifera), 3'ss of exon 3
gtacatgcttgtctgtttgatcttgtgtttta-gtactaaatta--gttcataagttatttatattgtacactataccgtcatttgattttcgctaatgtt-ttaattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACT
              ||   ||||  |     |   |   | | |  |||| ||  |   | | ||| |  |  || |  ||| ||||| | | ||    ||  || || | ||||||| ||   |||||| ||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||| |
--------------gtgacatctcttaacaaacacatagagtcaatgttcgtatttatgtaacattttcta--attcgatcacttgatataccctttctttgctatttgttagGCTGCCTCCAGCACTGCTAACACTGACCTCCCTTCAACCCACCCAATCCGTCTTGGCCTTGCTCTCAACTTCTCTGTCTTCTACTATGAGATAATGAATT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7795610|gb|AW781007.1|AW781007
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|207840744|gb|GD810937.1|GD810937
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACA
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACA
EST: gi|10843368|gb|BF067173.1|BF067173
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|14011701|gb|BG726623.1|BG726623
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|18690824|gb|BM519672.1|BM519672
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|7284525|gb|AW597114.1|AW597114
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|31468373|gb|CD410401.1|CD410401
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|21887789|gb|BQ741002.1|BQ741002
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|4306793|gb|AI443955.1|AI443955
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|7692312|gb|AW760421.1|AW760421
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|208081589|gb|GD882047.1|GD882047
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACNCAGATCTTCCATCAACACA
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACA
EST: gi|7924046|gb|AW830054.1|AW830054
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: gi|57574121|gb|CX547096.1|CX547096
EST:     CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG                         GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatattgtacactataccgtcatttgattttcgctaatgttttaattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAATTTCTCTGTCTTTTATTATGAGATAATGAACT
                                          ttttaat  putative branch site (score: 3)
                                     taatgttttaattatc  TA-rich tract