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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taatatttgacactaattcttagtctgccaattgggtctgatcaacttgttacattctgattattgtcttgtcctccccttttatatatatgaatttcagTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTG

Basic information

species Glycine max
transcript GLYMA02G12700.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12700.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 3'ss of exon 2
-taatatttgacactaattcttagtctgccaattgggtctgatcaacttgttacattctgattattgtcttgtcctccccttttatatatatgaatttcagTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTG
 |  |  || | ||  |||       |   |   | |       |  |||||  |  ||  |||| ||  |        | |||   | | |  | ||||||||||||| || |||||||| ||| | ||||| || |||||||||||||| ||||||||||||||| | |||  |||||
ttggtgattaaaacatattgggttattaagagcagagaaatggaactttgttctagcctttttat-gtgataattaatacattttcttttctctagttcagTGCAGGAAACAGAAAGATCTATATTTATGGATGGCCAAATGCCCCAATGGTCCATCTGTAAAATTTATGGTTGATGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398224|gb|EV268102.1|EV268102
EST:     TGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC
genomic: TGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtattttttt ... tgaatttcagTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC
EST: gi|6718836|gb|AW306483.1|AW306483
EST:     TGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCANAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC
genomic: TGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtattttttt ... tgaatttcagTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC
EST: gi|192299747|gb|FG990042.1|FG990042
EST:     TGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC
genomic: TGAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtattttttt ... tgaatttcagTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC
EST: gi|8827473|gb|BE211203.1|BE211203
EST:     CTTGTTTATTTTTTGAG                         TGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC
genomic: CTTGTTTATTTTTTGAGgtattttttt ... tgaatttcagTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttacattctgattattgtcttgtcctccccttttatatatatgaatttcagTGCAGGAAGCAAAAAGATCTTTATCTCTGGATAGCAAAATGCCCCAATGGCCCATCTGTAAAATTTTTAGTTAGTGCTG
         ttctgat  putative branch site (score: 3)
                                  ttttatatatatgaat  TA-rich tract