Sequence
atgc intronic sequence ATGC exonic sequencegtaatgtcttgtctctttactttgatttggagactctttccttagcctcattgaaatgaactcttcaacagACACAAGTTTCAGCAAAGTTTGTCATGAAGACAGATGATGATGCGTTTGTTCGGGTAGATGAAGTTTTAGACTCTTTGCACAGAATCAATACTGATCATG
Basic information
| species | Glycine max |
| transcript | GLYMA02G12030.1 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G12030.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G164072_T01 (Zea mays), 3'ss of exon 4
-----------gtaatgtcttgtctctttactttgatttggagactctttcc------ttagcctcattgaaatgaac-tcttcaacagACACAAGTT---TCAGCAAAGTTTGTCATGAAGACAGATGATGATGCGTTTGTTCGGGTAGATGAAGTTTTAGACTCTTTGCACAGAATCAATACTGATCATG
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gtatatatgatttattgcattattt-tttattttacttggatgacacttgatattatgtttgcattttctaagcaagtgttctttgcagACAAATGTCCTGTCAGCCAAGTATGTGATGAAAACTGATGATGATGCTTTTGTTCGAGTAGATGAAATACTTTCTTCCCTCGACCGAACCAATATCAGTC---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151395701|gb|EV265578.1|EV265578EST: ACTACTACAGCCTCATCACTTGGAAATCTTTAGCAATCTGCATTTTTGGG ACACAAGTTTCAGCAAAGTTTGTCATGAAGACAGATGATGATGCGTTTGTT
genomic: ACTACTACAGCCTCATCACTTGGAAATCTTTAGCAATCTGCATTTTTGGGgtaatgtctt ... tcttcaacagACACAAGTTTCAGCAAAGTTTGTCATGAAGACAGATGATGATGCGTTTGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttactttgatttggagactctttccttagcctcattgaaatgaactcttcaacagACACAAGTTTCAGCAAAGTTTGTCATGAAGACAGATGATGATGCGTTTGTTCGGGTAGATGAAGTTTTAGACTCTTTGCACAGAATCAATACTGATCATG
ctttgat putative branch site (score: 5)
ctcttc putative PPT
attgaaat TA-rich tract
